Ss1.1-rste19_m20.5
|
GCAGCTGCCGCCAAGTCCGGATCCGACACTGTGCGCCTCCCACGCCCGCCCGAAGTGCAC
TCCCGATTCCTTTTGGTTCTAAATCCACTATGGCAACTCTCAAGGATCAGCTGATTCACA
ATCTTCTTAAGGAAGAGCATGTTCCCCACAATAAGATTACAGTTGTTGGGGTTGGTGCTG
TTGGCATGGCTTGTGCCATCAGTATCTTAATGAAGGAATTGGCGGATGAAATTGCTCTCG
TTGATGTCATGGAAGACAAACTGAAGGGAGAGATGATGGATCTGCAACATGGCAGCCTTT
TCCTTAGGACCCCAAAAATTGTCTCTGGCAAAGACTATAACGTGACTGCAAACTCTAGGC
TGGTTGTTATCACAGCTGGGGCACGTCAGCAAGAGGGAGAAAGCCGTCTTAATTTGGTCC
AGCGTAATGTGAACATCTTTAAATTCATCATTCCTAATATTGTAAAATACAGCCCAAACT
GCAAGTTGCTTGTTGTTTCCAATCCAGTGGATATCTTGACCTATGTGGCTTGGAAGATAA
GTGGCTTTCCCAAAAACCGTGTTATTGGAAGTGGTTGCAATTTGGATTCAGCCCGGTTCC
GTTACCTAATGGGGGAAAGGCTGGGAGTTCACCCCCTAAGCTGTCATGGGTGGATCCTTG
GGGAGCATGGAGACTCTAGTGTGCCTGTGTGGAGCGGAGTAAATGTTGCTGGTGTCTCCC
TGAAGAATCTGCACCCTGAATTAGGCACTGATGCAGATAAGGAACACTGGAAAGCAGTTC
ACAAACAGGTGGTGGACAGTGCTTATGAGGTGATCAAACTGAAAGGCTACACGTCCTGGG
CCATTGGACTATCTGTGGCAGATCTGGCAGAAAGTATAATGAAGAATCTTAGGCGGGTGC
ATCCGATTTCCACCATGATTAAGGGTCTCTATGGGATAAAAGAGGATGTCTTCCTTAGTG
TTCCTTGCATCTTGGGACAGAATGGAATCTCAGATGTTGTGAAAGTGACTCTGACTCCTG
AGGAAGAGGCTCATTTGAAGAAGAGTGCAGATACACTTTGGGGGATCCAGAAAGAGCTGC
AATTTTAAAGTCTCTCATAACATACCACTTTCACTGTCTAGGCTACAACAAGATTTTAGT
TGGAGGTTGTGCATATTGTTCTTTTTATCTGATCTGTGACTAAAGCAGTAATGTTAAGAC
AGCCTAGGAAAAACAGCCATTTCCTAAAGTTAGGAGTGGTTCATAAACCCCCACAGCTGT
ATCCTGATGTTGGATGGTACTTATCTTGTGTAGTCCTAAATTGGTTCTTGTAAAATAGTT
CTACTTTCTCAAGAGGCACCCGGGCCAGTGTTGCAGATGCTGCAGTTGCCTTTCAAGCCA
GATATATGTTTACTCTGTGTTATATAATATCTGGTTCCTTTAGCTAAGATGCCCAGTCTA
ACTCTTTTATCTCCAATTAATCACATCCTGGGATCCAATGTACAAATCCAGTATTGCATG
TCTTGTGATAACTATTCTAAAGAATCTTATTTTATGTACTGTATGTATCAGAATAGTGTA
CAATGCCATGTAATGTAAGAAGAAAAATCAAAATCTATATAAATAATGCAGCCAACTATC
CAGCTGTTATACCAACTAAAACAACAAATAAACCTTGAACAGTGAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GCAGCTGCCGCCAAGTCCGGATCCGACACTGTGCGCCTCCCACGCCCGCCCGAAGTGCAC
TCCCGATTCCTTTTGGTTCTAAATCCACTATGGCAACTCTCAAGGATCAGCTGATTCACA
ATCTTCTTAAGGAAGAGCATGTTCCCCACAATAAGATTACAGTTGTTGGGGTTGGTGCTG
TTGGCATGGCTTGTGCCATCAGTATCTTAATGAAGGAATTGGCGGATGAAATTGCTCTCG
TTGATGTCATGGAAGACAAACTGAAGGGAGAGATGATGGATCTGCAACATGGCAGCCTTT
TCCTTAGGACCCCAAAAATTGTCTCTGGCAAAGACTATAACGTGACTGCAAACTCTAGGC
TGGTTGTTATCACAGCTGGGGCACGTCAGCAAGAGGGAGAAAGCCGTCTTAATTTGGTCC
AGCGTAATGTGAACATCTTTAAATTCATCATTCCTAATATTGTAAAATACAGCCCAAACT
GCAAGTTGCTTGTTGTTTCCAATCCAGTGGATATCTTGACCTATGTGGCTTGGAAGATAA
GTGGCTTTCCCAAAAACCGTGTTATTGGAAGTGGTTGCAATTTGGATTCAGCCCGGTTCC
GTTACCTAATGGGGGAAAGGCTGGGAGTTCACCCCCTAAGCTGTCATGGGTGGATCCTTG
GGGAGCATGGAGACTCTAGTGTGCCTGTGTGGAGCGGAGTAAATGTTGCTGGTGTCTCCC
TGAAGAATCTGCACCCTGAATTAGGCACTGATGCAGATAAGGAACACTGGAAAGCAGTTC
ACAAACAGGTGGTGGACAGTGCTTATGAGGTGATCAAACTGAAAGGCTACACGTCCTGGG
CCATTGGACTATCTGTGGCAGATCTGGCAGAAAGTATAATGAAGAATCTTAGGCGGGTGC
ATCCGATTTCCACCATGATTAAGGGTCTCTATGGGATAAAAGAGGATGTCTTCCTTAGTG
TTCCTTGCATCTTGGGACAGAATGGAATCTCAGATGTTGTGAAAGTGACTCTGACTCCTG
AGGAAGAGGCTCATTTGAAGAAGAGTGCAGATACACTTTGGGGGATCCAGAAAGAGCTGC
AATTTTAAAGTCTCTCATAACATACCACTTTCACTGTCTAGGCTACAACAAGATTTTAGT
TGGAGGTTGTGCATATTGTTCTTTTTATCTGATCTGTGACTAAAGCAGTAATGTTAAGAC
AGCCTAGGAAAAACAGCCATTTCCTAAAGTTAGGAGTGGTTCATAAACCCCCACAGCTGT
ATCCTGATGTTGGATGGTACTTATCTTGTGTAGTCCTAAATTGGTTCTTGTAAAATAGTT
CTACTTTCTCAAGAGGCACCCGGGCCAGTGTTGCAGATGCTGCAGTTGCCTTTCAAGCCA
GATATATGTTTACTCTGTGTTATATAATATCTGGTTCCTTTAGCTAAGATGCCCAGTCTA
ACTCTTTTATCTCCAATTAATCACATCCTGGGATCCAATGTACAAATCCAGTATTGCATG
TCTTGTGATAACTATTCTAAAGAATCTTATTTTATGTACTGTATGTATCAGAATAGTGTA
CAATGCCATGTAATGTAAGAAGAAAAATCAAAATCTATATAAATAATGCAGCCAACTATC
CAGCTGTTATACCAACTAAAACAACAAATAAACCTTGAACAGTGAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
|
|
84-1106, gnl|bosTau2|chr9 (56853209-56854230) |
|
84-1106, gnl|Hg17|chr6 (157691438-157690473) |
|
84-1106, gnl|Mm7|chr17 (5363795-5362789) |
| |
|
86-1079, gnl|bosTau2|chr5 (53653040-53652044) |
|
86-1079, gnl|Hg17|chrX (75338948-75337952) |
|
86-1079, gnl|Mm7|chr19 (21635509-21636505) |
| |
|
102-1078, gnl|bosTau2|chr11 (61814308-61815266) |
|
102-1078, gnl|Hg17|chrX (75338932-75337953) |
|
102-1078, gnl|Mm7|chr19 (21635525-21636504) |
| |
|
1232-1665, gnl|bosTau2|chr29 (18422535-18422122) |
|
1232-1665, gnl|Hg17|chr11 (18385575-18385970) |
|
1232-1665, gnl|Mm7|chr7 (43031464-43031828) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
84-1106, gnl|bosTau2|chr9 (56853209-56854230) |
|
84-1106, gnl|Hg17|chr6 (157691438-157690473) |
|
84-1106, gnl|Mm7|chr17 (5363795-5362789) |
| |
|
86-1079, gnl|bosTau2|chr5 (53653040-53652044) |
|
86-1079, gnl|Hg17|chrX (75338948-75337952) |
|
86-1079, gnl|Mm7|chr19 (21635509-21636505) |
| |
|
102-1078, gnl|bosTau2|chr11 (61814308-61815266) |
|
102-1078, gnl|Hg17|chrX (75338932-75337953) |
|
102-1078, gnl|Mm7|chr19 (21635525-21636504) |
| |
|
1232-1665, gnl|bosTau2|chr29 (18422535-18422122) |
|
1232-1665, gnl|Hg17|chr11 (18385575-18385970) |
|
1232-1665, gnl|Mm7|chr7 (43031464-43031828) |
|
tbr (14.9553) |
|
bfe (8.54189) |
|
ldo (7.76021) |
|
sme (6.71961) |
|
ste (6.08437) |
|
ssp (1.89728) |
|
ret (1.80227) |
|
nms (1.49701) |
|
jej (1.48383) |
|
mas (1.26183) |
|
sin (1.22463) |
|
lin (1.01922) |
|
nje (0.99552) |
|
csp (0.805932) |
|
isp (0.75188) |
|
nep (0.7357) |
|
vin (0.665115) |
|
tes (0.623441) |
|
col (0.585023) |
|
cbl (0.573987) |
|
nco (0.485201) |
|
cag (0.453583) |
|
liv (0.438853) |
|
spl (0.429553) |
|
amn (0.417711) |
|
cty (0.41632) |
|
fcc (0.39557) |
|
mgm (0.360685) |
|
eru (0.360144) |
|
fty (0.351679) |
|
ton (0.351) |
|
ecc (0.345105) |
|
eye (0.341006) |
|
mga (0.32041) |
|
eje (0.296501) |
|
fat (0.294855) |
|
ski (0.29347) |
|
lnt (0.284616) |
|
ute (0.265569) |
|
bla (0.248694) |
|
ebs (0.236602) |
|
med (0.232504) |
|
jca (0.22792) |
|
hea (0.204499) |
|
nlu (0.191681) |
|
sag (0.182715) |
|
rec (0.17307) |
|
cut (0.169924) |
|
fco (0.157208) |
|
lun (0.150489) |
|
pty (0.142714) |
|
csk (0.140746) |
|
nca (0.136874) |
|
pla (0.133672) |
|
ova (0.129132) |
|
cbr (0.127975) |
|
sug (0.127291) |
|
ese (0.126502) |
|
eep (0.122564) |
|
cly (0.120642) |
|
clu (0.119646) |
|
pgl (0.118483) |
|
tbr (14.9553) |
|
bfe (8.54189) |
|
ldo (7.76021) |
|
sme (6.71961) |
|
ste (6.08437) |
|
ssp (1.89728) |
|
ret (1.80227) |
|
nms (1.49701) |
|
jej (1.48383) |
|
mas (1.26183) |
|
sin (1.22463) |
|
lin (1.01922) |
|
nje (0.99552) |
|
csp (0.805932) |
|
isp (0.75188) |
|
nep (0.7357) |
|
vin (0.665115) |
|
tes (0.623441) |
|
col (0.585023) |
|
cbl (0.573987) |
|
nco (0.485201) |
|
cag (0.453583) |
|
liv (0.438853) |
|
spl (0.429553) |
|
amn (0.417711) |
|
cty (0.41632) |
|
fcc (0.39557) |
|
mgm (0.360685) |
|
eru (0.360144) |
|
fty (0.351679) |
|
ton (0.351) |
|
ecc (0.345105) |
|
eye (0.341006) |
|
mga (0.32041) |
|
eje (0.296501) |
|
fat (0.294855) |
|
ski (0.29347) |
|
lnt (0.284616) |
|
ute (0.265569) |
|
bla (0.248694) |
|
ebs (0.236602) |
|
med (0.232504) |
|
jca (0.22792) |
|
hea (0.204499) |
|
nlu (0.191681) |
|
sag (0.182715) |
|
rec (0.17307) |
|
cut (0.169924) |
|
fco (0.157208) |
|
lun (0.150489) |
|
pty (0.142714) |
|
csk (0.140746) |
|
nca (0.136874) |
|
pla (0.133672) |
|
ova (0.129132) |
|
cbr (0.127975) |
|
sug (0.127291) |
|
ese (0.126502) |
|
eep (0.122564) |
|
cly (0.120642) |
|
clu (0.119646) |
|
pgl (0.118483) |
