Non-Coding RNA Search

Ss1.1-rste20_c12.5

Sequence:


               
               AAAAAAAAGACACCAAAGTGTTTGGGAATTTTAATCCCAAGAAATAAACATCCCAGAGTC
AGACCCCATTTGCTGTTCAGTCTTTTACATATTTCTATGACAGAATGTAATTTAGGAAAC
CAGGAGTTAAAAGATGAAAAATGCAAGCATGTTACAATGGTTGTTTATTGCTCTTTTTAA
ACTTGCTGGCTTTAACTTAAGGAATGTAGGTATGTACATTATCTAAAGCTGTCAGGTATC
TGTGGCCCTGTTAATAACTTAAGGGACTAGAGAGTACAAAAATGCCTGTACAATTTGTTT
TAAGGGCTTGTCTTTATGTTTGTAATTTCAGTTAAATATTTTCTACAGATTGTTTTACTT
CTGCCTTTTCCCCAATAATAGGTATATGTTCTTGTAACATTCACTTTGGTAAAGGTTGAA
GCCTTTGGAAGTAGATGCCAAAATGTATAGTTGCAAGCAGCAAGCGGTTGGTATAAACTG
CCTGTAGCTACTACTATCAATGATAGAGAAGAGTCCAGAGTAGCTCGGGTTGGTCTATGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAAAAAGACACCAAAGTGTTTGGGAATTTTAATCCCAAGAAATAAACATCCCAGAGTC
AGACCCCATTTGCTGTTCAGTCTTTTACATATTTCTATGACAGAATGTAATTTAGGAAAC
CAGGAGTTAAAAGATGAAAAATGCAAGCATGTTACAATGGTTGTTTATTGCTCTTTTTAA
ACTTGCTGGCTTTAACTTAAGGAATGTAGGTATGTACATTATCTAAAGCTGTCAGGTATC
TGTGGCCCTGTTAATAACTTAAGGGACTAGAGAGTACAAAAATGCCTGTACAATTTGTTT
TAAGGGCTTGTCTTTATGTTTGTAATTTCAGTTAAATATTTTCTACAGATTGTTTTACTT
CTGCCTTTTCCCCAATAATAGGTATATGTTCTTGTAACATTCACTTTGGTAAAGGTTGAA
GCCTTTGGAAGTAGATGCCAAAATGTATAGTTGCAAGCAGCAAGCGGTTGGTATAAACTG
CCTGTAGCTACTACTATCAATGATAGAGAAGAGTCCAGAGTAGCTCGGGTTGGTCTATGT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               195-306, - strand, RNAz p=0.701796
               

               
               387-503, - strand, RNAz p=0.90449

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               195-306, - strand, RNAz p=0.701796
               

               
               387-503, - strand, RNAz p=0.90449

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-536, gnl|bosTau2|chr19 (28206085-28205543)
               

               
               1-536, gnl|Hg17|chr17 (46396122-46395590)
               

               
               1-536, gnl|Mm7|chr11 (94233645-94234130)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-536, gnl|bosTau2|chr19 (28206085-28205543)
               

               
               1-536, gnl|Hg17|chr17 (46396122-46395590)
               

               
               1-536, gnl|Mm7|chr11 (94233645-94234130)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               ebs (0.236602)
               

               
               nco (0.161734)
               

               
               lnt (0.142308)
               

               
               ste (0.135208)
               

               
               jca (0.11396)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.236602)
               

               
               nco (0.161734)
               

               
               lnt (0.142308)
               

               
               ste (0.135208)
               

               
               jca (0.11396)

	195-306, - strand, RNAz p=0.701796
	387-503, - strand, RNAz p=0.90449

	1-536, gnl\|bosTau2\|chr19 (28206085-28205543)
	1-536, gnl\|Hg17\|chr17 (46396122-46395590)
	1-536, gnl\|Mm7\|chr11 (94233645-94234130)

	ebs (0.236602)
	nco (0.161734)
	lnt (0.142308)
	ste (0.135208)
	jca (0.11396)