Non-Coding RNA Search

Ss1.1-rste22_e24.5

Sequence:


               
               GTGAAGAGGAGCTGGCGACCTTCTTCAGAGAAGACACCCCCGTTACGCACCTTTACTTTG
GTCGTTCAGTAAGCAGAGCGGTTCTAGGACGGATAGGTCTCCGCTGCCCTCGGCTGATCG
AGTTAGTAGTGTGTGCTAATGGTCTTCAGGCGCTTGACAATGAACTTCTTTGTATTGGTG
AACACTGTCACAACCTAACAGCCTTGGGCCTCAGGGAATGTGAAGTTAGCTGCAGTGCGT
TCATTGAGTTTGTCAGGCGGTGCGGGAGAAGGCTAACGCAGCTCTCTATAACCGAGGACG
TTTTGACCCCTGACGGCGATTATAGCCTGGATGAAATGCACGCCGAAGTCTCCAAACACT
TGGGAAGAATATGGTTCCCTGATGTCACGCCTCTCTGGTAATGGACTACCAAAGGTGCTT
ACCTTAAAAAATAATAGTAATAATCAGGAAGATTAGCTTCTTTCTCTCTGTGCAAATGAA
AATTTTAAGATGCGTTGCCGAAGTGTTTTAGGTAAAATATATTCTTGTTCGCAAACTGTC
TTCATGTGATTACAGCAGACATTTGGAAAAGTGTGAGAAATCTGCAAAGGCAGAAATTGT
AAGTAAGGCACAGACACTGTTTTTGTGGATAGGATAGTGGACGTGGTAAAAAGTACAGTT
GGATTTTTAGGGTAAGTTCCTCAGCTTGCCTTGGAAGGCGTATTTTGGCTCATTAAATAA
ATGTATAATATGGAGCTTTGAATCCTTTAAAGTATGTCATTTACAACTTTCTATTGTTAA
TTGTTTCTGTTTCATCTTGGTATTAATATGTTTTACAAAATATTTAATATTAAAAACTGA
GTTCAATCAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGAAGAGGAGCTGGCGACCTTCTTCAGAGAAGACACCCCCGTTACGCACCTTTACTTTG
GTCGTTCAGTAAGCAGAGCGGTTCTAGGACGGATAGGTCTCCGCTGCCCTCGGCTGATCG
AGTTAGTAGTGTGTGCTAATGGTCTTCAGGCGCTTGACAATGAACTTCTTTGTATTGGTG
AACACTGTCACAACCTAACAGCCTTGGGCCTCAGGGAATGTGAAGTTAGCTGCAGTGCGT
TCATTGAGTTTGTCAGGCGGTGCGGGAGAAGGCTAACGCAGCTCTCTATAACCGAGGACG
TTTTGACCCCTGACGGCGATTATAGCCTGGATGAAATGCACGCCGAAGTCTCCAAACACT
TGGGAAGAATATGGTTCCCTGATGTCACGCCTCTCTGGTAATGGACTACCAAAGGTGCTT
ACCTTAAAAAATAATAGTAATAATCAGGAAGATTAGCTTCTTTCTCTCTGTGCAAATGAA
AATTTTAAGATGCGTTGCCGAAGTGTTTTAGGTAAAATATATTCTTGTTCGCAAACTGTC
TTCATGTGATTACAGCAGACATTTGGAAAAGTGTGAGAAATCTGCAAAGGCAGAAATTGT
AAGTAAGGCACAGACACTGTTTTTGTGGATAGGATAGTGGACGTGGTAAAAAGTACAGTT
GGATTTTTAGGGTAAGTTCCTCAGCTTGCCTTGGAAGGCGTATTTTGGCTCATTAAATAA
ATGTATAATATGGAGCTTTGAATCCTTTAAAGTATGTCATTTACAACTTTCTATTGTTAA
TTGTTTCTGTTTCATCTTGGTATTAATATGTTTTACAAAATATTTAATATTAAAAACTGA
GTTCAATCAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61865380|ref|XP_588421.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61865380|ref|XP_588421.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               2-404, gnl|bosTau2|chr12 (26194728-26195130)
               

               
               2-404, gnl|Hg17|chr13 (76479680-76479278)
               

               
               2-404, gnl|Mm7|chr14 (97516118-97515716)
               


               
               664-851, gnl|bosTau2|chr7 (31656995-31656808)
               

               
               664-851, gnl|Hg17|chr5 (135305524-135305696)
               

               
               664-851, gnl|Mm7|chr13 (55629416-55629621)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-404, gnl|bosTau2|chr12 (26194728-26195130)
               

               
               2-404, gnl|Hg17|chr13 (76479680-76479278)
               

               
               2-404, gnl|Mm7|chr14 (97516118-97515716)
               


               
               664-851, gnl|bosTau2|chr7 (31656995-31656808)
               

               
               664-851, gnl|Hg17|chr5 (135305524-135305696)
               

               
               664-851, gnl|Mm7|chr13 (55629416-55629621)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               elu (0.385356)
               

               
               ste (0.270416)
               

               
               sto (0.179824)
               

               
               cut (0.169924)
               

               
               fhi (0.169578)
               

               
               pty (0.142714)
               

               
               lyg (0.133103)

Expressed library(ies): 7 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               ste (0.270416)
               

               
               sto (0.179824)
               

               
               cut (0.169924)
               

               
               fhi (0.169578)
               

               
               pty (0.142714)
               

               
               lyg (0.133103)

	2-404, gnl\|bosTau2\|chr12 (26194728-26195130)
	2-404, gnl\|Hg17\|chr13 (76479680-76479278)
	2-404, gnl\|Mm7\|chr14 (97516118-97515716)

	664-851, gnl\|bosTau2\|chr7 (31656995-31656808)
	664-851, gnl\|Hg17\|chr5 (135305524-135305696)
	664-851, gnl\|Mm7\|chr13 (55629416-55629621)

	elu (0.385356)
	ste (0.270416)
	sto (0.179824)
	cut (0.169924)
	fhi (0.169578)
	pty (0.142714)
	lyg (0.133103)