Non-Coding RNA Search

Ss1.1-rste23_a1.5

Sequence:


               
               TCAAAAGGACTTTCTGCAGTGATGGAAATGTGTCCATCCAGTTTGTTACTATCCAGCATA
GTAGCCACTACTCCCATATGCCTACTGAGCATTTGTAATGTGATTAATATGACTTCATTT
TTAATATTATTCATTTAATTTAAATAGCCACATGGAACTGGTGGCTACAGTATTGGATAG
TACTGATGCAAATTATTCTTTAACACCTCCTAAAGTTGTGTCACATAGACGCACTGGTAA
AAGAGGCTTTCTAAGGTAAATACTGAAACCTAACTCATATTAAACTAAAAAAAAAAGGTT
ATGAGGATGCAGAGTTGACTCATAGACCCCCATATCAGGAATGCACCTGGGCCCAGGAAT
AATTTGGGCTTGAAATTCAAATGTCATCAAGACTTACTCTTGGCTCTTCTCTGTGTATCT
GCTTTATTTTCTTTGCACACAGACATTCTCTTCCTCAATCCACATTGTAAAGAGAAGGCC
ACAGTCAATAGTCCCTAGGTTTTTACATCTCAGTTTAAGATAGTGGCTGGACTGAGCAAG
AATCATTCTGATAGTAAACTCCTAAGAGGAACTTGGTCAAATGATGATTCCTTTTGCAGT
AATGTAAAAGAATTTCTATAAAAAAGAAGATGCATGGAGTTCCCGTCGTGGCGCATCAGA
AATGAATCCTAGGAACCATGAGATTGTGGGTCCGATCCCTGGCCTCGCTCAGTGGGTTAA
GGGTCTGGCGTTGCCGTGGGCTGTGGTGTATGTCGCAAATGCAGCTCGGATGCCGAGTTG
CTGTGGCTGTGGTGTAGGCCAGCGGCGGCAGCCCCGATTAGACACCTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCAAAAGGACTTTCTGCAGTGATGGAAATGTGTCCATCCAGTTTGTTACTATCCAGCATA
GTAGCCACTACTCCCATATGCCTACTGAGCATTTGTAATGTGATTAATATGACTTCATTT
TTAATATTATTCATTTAATTTAAATAGCCACATGGAACTGGTGGCTACAGTATTGGATAG
TACTGATGCAAATTATTCTTTAACACCTCCTAAAGTTGTGTCACATAGACGCACTGGTAA
AAGAGGCTTTCTAAGGTAAATACTGAAACCTAACTCATATTAAACTAAAAAAAAAAGGTT
ATGAGGATGCAGAGTTGACTCATAGACCCCCATATCAGGAATGCACCTGGGCCCAGGAAT
AATTTGGGCTTGAAATTCAAATGTCATCAAGACTTACTCTTGGCTCTTCTCTGTGTATCT
GCTTTATTTTCTTTGCACACAGACATTCTCTTCCTCAATCCACATTGTAAAGAGAAGGCC
ACAGTCAATAGTCCCTAGGTTTTTACATCTCAGTTTAAGATAGTGGCTGGACTGAGCAAG
AATCATTCTGATAGTAAACTCCTAAGAGGAACTTGGTCAAATGATGATTCCTTTTGCAGT
AATGTAAAAGAATTTCTATAAAAAAGAAGATGCATGGAGTTCCCGTCGTGGCGCATCAGA
AATGAATCCTAGGAACCATGAGATTGTGGGTCCGATCCCTGGCCTCGCTCAGTGGGTTAA
GGGTCTGGCGTTGCCGTGGGCTGTGGTGTATGTCGCAAATGCAGCTCGGATGCCGAGTTG
CTGTGGCTGTGGTGTAGGCCAGCGGCGGCAGCCCCGATTAGACACCTA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               377-492, - strand, RNAz p=0.800266

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               377-492, - strand, RNAz p=0.800266

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               298-634, gnl|bosTau2|chr17 (12892325-12892662)
               

               
               298-634, gnl|Hg17|chr4 (140565287-140564621)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               298-634, gnl|bosTau2|chr17 (12892325-12892662)
               

               
               298-634, gnl|Hg17|chr4 (140565287-140564621)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               cje (0.165235)
               

               
               ste (0.135208)
               

               
               eep (0.122564)
               

               
               cty (0.10408)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cje (0.165235)
               

               
               ste (0.135208)
               

               
               eep (0.122564)
               

               
               cty (0.10408)

	298-634, gnl\|bosTau2\|chr17 (12892325-12892662)
	298-634, gnl\|Hg17\|chr4 (140565287-140564621)