Non-Coding RNA Search

Ss1.1-rste23_e10.5

Sequence:


               
               ACCTAATGAGTCTTAGTGGAAAAACGCTTTGTGTGACTTCAGGCTCAGCACCCTCTGTGA
TTGACAGTCCCAGTACTCTTCTCTGTCAGTATATCAACCTACAGCTCTTGAATGCAGACC
CACAAGGGTGTTTAATGGGGACAGTGGGCACTCTTCTACTTGAAAACCCACTTGGGCAGA
ATGGACTCACCCACCAAGGTCTTCTGTATGAAGCAGCCAAGGTGTTTGGCCTTCGGAGCA
GAAAGCTGAAACTCTTTCTGGATGAGACTCAAACAGAGGAAATTACAGAAGAAACTCCCA
TGAAGACTTTGAACACGAAGACTGTGTATGTTGCTGTATTACCAACGACAGCAGACTTAT
AACGTTCAGTTAGCAGTGTGATTCAGTCTTCCTTTCTCTGGCATATATACCTGTTGTTTC
TCCCCCAAACCCCCAATCTCAACATGGGACAGACACATCAAAGATACTTAGTTGAGGTGC
ATGTATCATATGCTGCTTTTGGTCTCTGATAGAAATGGAATTGATTCATCAAGTGACTTG
AGACTTCACGGTAATATTCCCACTTAACCCTAGACACGTATGCAGTCGTGTTGAGGGAAA
GTCACAATGTCACCTCAGTACTACAGAGTATACTTCTGTACTTGAGCTTTTAAGTATAGA
ATGTAGAAATGGTTAAATTATATATATATAGATTATTCTATGGCCTTTTAAAATATATTT
GAGGGAGTTCCATGGCACGGTGGGTTAAGGATCCAGTGTTGATGCAGCTGTGGCATAGGT
CACATCTGCAGCTTGGATTCTTTCCTTGGTTTGGGAACTTCCACATGCTGCAGGTGCAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACCTAATGAGTCTTAGTGGAAAAACGCTTTGTGTGACTTCAGGCTCAGCACCCTCTGTGA
TTGACAGTCCCAGTACTCTTCTCTGTCAGTATATCAACCTACAGCTCTTGAATGCAGACC
CACAAGGGTGTTTAATGGGGACAGTGGGCACTCTTCTACTTGAAAACCCACTTGGGCAGA
ATGGACTCACCCACCAAGGTCTTCTGTATGAAGCAGCCAAGGTGTTTGGCCTTCGGAGCA
GAAAGCTGAAACTCTTTCTGGATGAGACTCAAACAGAGGAAATTACAGAAGAAACTCCCA
TGAAGACTTTGAACACGAAGACTGTGTATGTTGCTGTATTACCAACGACAGCAGACTTAT
AACGTTCAGTTAGCAGTGTGATTCAGTCTTCCTTTCTCTGGCATATATACCTGTTGTTTC
TCCCCCAAACCCCCAATCTCAACATGGGACAGACACATCAAAGATACTTAGTTGAGGTGC
ATGTATCATATGCTGCTTTTGGTCTCTGATAGAAATGGAATTGATTCATCAAGTGACTTG
AGACTTCACGGTAATATTCCCACTTAACCCTAGACACGTATGCAGTCGTGTTGAGGGAAA
GTCACAATGTCACCTCAGTACTACAGAGTATACTTCTGTACTTGAGCTTTTAAGTATAGA
ATGTAGAAATGGTTAAATTATATATATATAGATTATTCTATGGCCTTTTAAAATATATTT
GAGGGAGTTCCATGGCACGGTGGGTTAAGGATCCAGTGTTGATGCAGCTGTGGCATAGGT
CACATCTGCAGCTTGGATTCTTTCCTTGGTTTGGGAACTTCCACATGCTGCAGGTGCAGC

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               125-243, + strand, RNAz p=0.768884
               

               
               567-684, + strand, RNAz p=0.978102

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               125-243, + strand, RNAz p=0.768884
               

               
               567-684, + strand, RNAz p=0.978102

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of D28473, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of D28473, +

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               125-277, gnl|bosTau2|chr8 (46767867-46768019)
               

               
               125-277, gnl|Hg17|chr9 (92064511-92064359)
               

               
               125-277, gnl|Mm7|chr13 (49216215-49216367)
               


               
               279-684, gnl|bosTau2|chr8 (46773000-46773394)
               

               
               279-684, gnl|canFam2|chr24 (21546455-21546174)
               

               
               279-684, gnl|dasNov1|scaffold_144707 (3658-3328)
               

               
               279-684, gnl|echTel1|scaffold_245898 (3308-3037)
               

               
               279-684, gnl|hg17|chr2 (183142342-183142634)
               

               
               279-684, gnl|Hg17|chr9 (92052727-92052332)
               

               
               279-684, gnl|loxAfr1|scaffold_48654 (3832-4120)
               

               
               279-684, gnl|mm7|chr13 (49218019-49217733)
               

               
               279-684, gnl|Mm7|chr13 (49217535-49217986)
               

               
               279-684, gnl|oryCun1|scaffold_179089 (39506-39820)
               

               
               279-684, gnl|panTro1|chr13 (72903911-72904203)
               

               
               279-684, gnl|rheMac2|chr15 (104122322-104122614)
               

               
               279-684, gnl|rn3|chr17 (20895976-20896265)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               125-277, gnl|bosTau2|chr8 (46767867-46768019)
               

               
               125-277, gnl|Hg17|chr9 (92064511-92064359)
               

               
               125-277, gnl|Mm7|chr13 (49216215-49216367)
               


               
               279-684, gnl|bosTau2|chr8 (46773000-46773394)
               

               
               279-684, gnl|canFam2|chr24 (21546455-21546174)
               

               
               279-684, gnl|dasNov1|scaffold_144707 (3658-3328)
               

               
               279-684, gnl|echTel1|scaffold_245898 (3308-3037)
               

               
               279-684, gnl|hg17|chr2 (183142342-183142634)
               

               
               279-684, gnl|Hg17|chr9 (92052727-92052332)
               

               
               279-684, gnl|loxAfr1|scaffold_48654 (3832-4120)
               

               
               279-684, gnl|mm7|chr13 (49218019-49217733)
               

               
               279-684, gnl|Mm7|chr13 (49217535-49217986)
               

               
               279-684, gnl|oryCun1|scaffold_179089 (39506-39820)
               

               
               279-684, gnl|panTro1|chr13 (72903911-72904203)
               

               
               279-684, gnl|rheMac2|chr15 (104122322-104122614)
               

               
               279-684, gnl|rn3|chr17 (20895976-20896265)

Expressed library(ies): 12 entry(ies)

More info

Expressed library(ies): 12 entry(ies)

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               tbr (0.462535)
               

               
               ute (0.265569)
               

               
               cmu (0.186393)
               

               
               fty (0.17584)
               

               
               spl (0.143184)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               eru (0.120048)
               

               
               clu (0.119646)
               

               
               cty (0.10408)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tbr (0.462535)
               

               
               ute (0.265569)
               

               
               cmu (0.186393)
               

               
               fty (0.17584)
               

               
               spl (0.143184)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               eru (0.120048)
               

               
               clu (0.119646)
               

               
               cty (0.10408)

	125-243, + strand, RNAz p=0.768884
	567-684, + strand, RNAz p=0.978102

	125-277, gnl\|bosTau2\|chr8 (46767867-46768019)
	125-277, gnl\|Hg17\|chr9 (92064511-92064359)
	125-277, gnl\|Mm7\|chr13 (49216215-49216367)

	279-684, gnl\|bosTau2\|chr8 (46773000-46773394)
	279-684, gnl\|canFam2\|chr24 (21546455-21546174)
	279-684, gnl\|dasNov1\|scaffold_144707 (3658-3328)
	279-684, gnl\|echTel1\|scaffold_245898 (3308-3037)
	279-684, gnl\|hg17\|chr2 (183142342-183142634)
	279-684, gnl\|Hg17\|chr9 (92052727-92052332)
	279-684, gnl\|loxAfr1\|scaffold_48654 (3832-4120)
	279-684, gnl\|mm7\|chr13 (49218019-49217733)
	279-684, gnl\|Mm7\|chr13 (49217535-49217986)
	279-684, gnl\|oryCun1\|scaffold_179089 (39506-39820)
	279-684, gnl\|panTro1\|chr13 (72903911-72904203)
	279-684, gnl\|rheMac2\|chr15 (104122322-104122614)
	279-684, gnl\|rn3\|chr17 (20895976-20896265)

	tbr (0.462535)
	ute (0.265569)
	cmu (0.186393)
	fty (0.17584)
	spl (0.143184)
	ste (0.135208)
	pla (0.133672)
	ova (0.129132)
	sug (0.127291)
	eru (0.120048)
	clu (0.119646)
	cty (0.10408)