Non-Coding RNA Search

Ss1.1-rste23_i8.5.5

Sequence:


               
               GAGACTTTTAGAAAAAGTCCAAGGAGCCCTGCTCCAGCATGCAGTGGCTTAGAGCTCGCC
CTGCTCAGTGTTGGTATGGCCCATTTGCCCCACAGGAAGCCTGGATGTTCCAAACTGCTC
AAAGAGGAAGAGATTCCGCTTTTCAACTTTGCTACTATCTTCCCTCAGGCAGAAAAATAA
ACATGGACTTACATGTCCTCTGAACGAAAACCAAAGTTTAAGATTTGCCACCTGACTTTT
AGCACTGGCCCTCCACAGGTGCCAGACTCTCCTCTCTGTCCGCCATCGATTCGCCCAGCT
CAGGCAGCTCTGCCAGCACCGTCCTGCCCCAGCAGAGCCTGGGCCTCGCCCTCGTGGAGG
ATAACTGAGATAGTAGGAACATGCTGATTTCTGGGGTTACTTATAACAATAAGAATCAGA
ACATTAACTTGAAATTGTCTTCACCAACTTGCTGTATGCATTTTTCACACCAGTACATTC
TTAAGCATCATTGTTTATATAGAATAACAAACTAATCTGTACCTTTCTATATATATATGT
GTACATATATACATGTATAAACTGTAGAGTGTACATGTTACTGATTTATTGAGCTGTCCC
AAATCTTTAACGCAGTTCTCATCCTTCGCATGCCCTCAGTCTGTGGTCAGATTACTTGAA
CATTCCCAATGATTCTGCCCACCTCCAGTGTTTGGACGTCTAAGGGAGGAGGGTTTGAAG
GTGCCCTCCTAGCCTCATGCACAGAAATGCTCAGGGTCCCCGTGTGCCTGTAGCCCAGCC
TCTTCTTGTCTATTGTTCCCCATCTGAGCATGTGGTCCCTCCTTGTTCTATAACTTCTCT
GCCCCCTCCCCAAGCTGTGGGACAGCTGCCTTCCTACTCAAGTGTAAAGCAGTATTAAGA
TCATTACTGCATGTGCGCTAAAACCCCAAGTTTTCTGTTCCTTTGAGACAGAAGATTGCA
TGTGAGGTGGGATAATCAAGTTTCAATGACCTCCGTCAGTTACACAACAAAGCCAGACCC
TGGAATAAAATTCCACAAAATGGAAATGAAACTCAAATTTCTCTAGCATTGTGTAAATAA
ATCTGGATGTGTTTAACTTTGTACTGGTAATTCTCTGTATATTTGCAATATTTGGGTTAG
AAATAAAACAGACTGGACTTTATTACCTGAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGACTTTTAGAAAAAGTCCAAGGAGCCCTGCTCCAGCATGCAGTGGCTTAGAGCTCGCC
CTGCTCAGTGTTGGTATGGCCCATTTGCCCCACAGGAAGCCTGGATGTTCCAAACTGCTC
AAAGAGGAAGAGATTCCGCTTTTCAACTTTGCTACTATCTTCCCTCAGGCAGAAAAATAA
ACATGGACTTACATGTCCTCTGAACGAAAACCAAAGTTTAAGATTTGCCACCTGACTTTT
AGCACTGGCCCTCCACAGGTGCCAGACTCTCCTCTCTGTCCGCCATCGATTCGCCCAGCT
CAGGCAGCTCTGCCAGCACCGTCCTGCCCCAGCAGAGCCTGGGCCTCGCCCTCGTGGAGG
ATAACTGAGATAGTAGGAACATGCTGATTTCTGGGGTTACTTATAACAATAAGAATCAGA
ACATTAACTTGAAATTGTCTTCACCAACTTGCTGTATGCATTTTTCACACCAGTACATTC
TTAAGCATCATTGTTTATATAGAATAACAAACTAATCTGTACCTTTCTATATATATATGT
GTACATATATACATGTATAAACTGTAGAGTGTACATGTTACTGATTTATTGAGCTGTCCC
AAATCTTTAACGCAGTTCTCATCCTTCGCATGCCCTCAGTCTGTGGTCAGATTACTTGAA
CATTCCCAATGATTCTGCCCACCTCCAGTGTTTGGACGTCTAAGGGAGGAGGGTTTGAAG
GTGCCCTCCTAGCCTCATGCACAGAAATGCTCAGGGTCCCCGTGTGCCTGTAGCCCAGCC
TCTTCTTGTCTATTGTTCCCCATCTGAGCATGTGGTCCCTCCTTGTTCTATAACTTCTCT
GCCCCCTCCCCAAGCTGTGGGACAGCTGCCTTCCTACTCAAGTGTAAAGCAGTATTAAGA
TCATTACTGCATGTGCGCTAAAACCCCAAGTTTTCTGTTCCTTTGAGACAGAAGATTGCA
TGTGAGGTGGGATAATCAAGTTTCAATGACCTCCGTCAGTTACACAACAAAGCCAGACCC
TGGAATAAAATTCCACAAAATGGAAATGAAACTCAAATTTCTCTAGCATTGTGTAAATAA
ATCTGGATGTGTTTAACTTTGTACTGGTAATTCTCTGTATATTTGCAATATTTGGGTTAG
AAATAAAACAGACTGGACTTTATTACCTGAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               466-611, - strand, RNAz p=0.984797
               

               
               726-960, - strand, RNAz p=0.824379

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               466-611, - strand, RNAz p=0.984797
               

               
               726-960, - strand, RNAz p=0.824379

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               942-1020, + strand, RNAmicro p=0.906582

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               942-1020, + strand, RNAmicro p=0.906582

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               5-1170, gnl|bosTau2|chr3 (30476233-30477399)
               

               
               5-1170, gnl|Hg17|chr1 (109565375-109564239)
               

               
               5-1170, gnl|Mm7|chr3 (108178704-108179799)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-1170, gnl|bosTau2|chr3 (30476233-30477399)
               

               
               5-1170, gnl|Hg17|chr1 (109565375-109564239)
               

               
               5-1170, gnl|Mm7|chr3 (108178704-108179799)

Expressed library(ies): 19 entry(ies)

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Expressed library(ies): 19 entry(ies)

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               fhi (0.508733)
               

               
               fco (0.314416)
               

               
               fcc (0.197785)
               

               
               sag (0.182715)
               

               
               fbs (0.175346)
               

               
               cje (0.165235)
               

               
               mga (0.160205)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               che (0.136314)
               

               
               ste (0.135208)
               

               
               ute (0.132784)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

Expressed library(ies): 19 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fhi (0.508733)
               

               
               fco (0.314416)
               

               
               fcc (0.197785)
               

               
               sag (0.182715)
               

               
               fbs (0.175346)
               

               
               cje (0.165235)
               

               
               mga (0.160205)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               che (0.136314)
               

               
               ste (0.135208)
               

               
               ute (0.132784)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

	466-611, - strand, RNAz p=0.984797
	726-960, - strand, RNAz p=0.824379

	5-1170, gnl\|bosTau2\|chr3 (30476233-30477399)
	5-1170, gnl\|Hg17\|chr1 (109565375-109564239)
	5-1170, gnl\|Mm7\|chr3 (108178704-108179799)

	fhi (0.508733)
	fco (0.314416)
	fcc (0.197785)
	sag (0.182715)
	fbs (0.175346)
	cje (0.165235)
	mga (0.160205)
	liv (0.146284)
	spl (0.143184)
	hyp (0.142837)
	che (0.136314)
	ste (0.135208)
	ute (0.132784)
	eru (0.120048)
	ecc (0.115035)
	spc (0.113366)
	nbm (0.0993246)
	eje (0.0988338)
	ldo (0.0970026)