Non-Coding RNA Search

Ss1.1-rste24_d18.5

Sequence:


               
               GTCGTGCGGCTGGAGGACTCGAACCCAGAGGGAGCGGCAGCATTCAGGAATGTGTATAAT
GCTCTACAAATGGATGCTGATGACTGAATAAAGGAAAGCTATGGTTAACAGGAGAACAGA
GAACAGTAACCAGTCGGTGTATCCCAATGTCGGTGCTGGACAAGTTTGTAGGACATCTGG
TATCTCTTGCAGGGTAACAACCTTTAAAGGAGAGTATAAAAGCAACAGCATTTCCACAGA
GCAAATATAACAATTCAAACATTTATAAAATGTGCTCTGGAGAAAAAAATTACAGTGGGC
ACAAAAAGAACCATTGAGTGGAAGTTACAGAGGCACATTTTGGCTCAGCGCTAACTGCTG
GAACAGGCTGCTGTGGGGTATCAACCCCCGAAGAAGTGCCACACGGATGCCAGAACATCT
TTCAACAGTGTGCTGGAAAGGATGCTTGCTCTGGAAGGAGGGCTGGAGGAAGGGACATCG
GTTACTTCCTCCTCTAAGAGTCTGTGATTAAAATGAGTTCATATGGAATATTTCCCGTTT
GCCACATGTATATCCATACTTTGACTTACTTGGAAGGAAATGATACATAGTCATTTTTTC
AGAAATAAAATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCGTGCGGCTGGAGGACTCGAACCCAGAGGGAGCGGCAGCATTCAGGAATGTGTATAAT
GCTCTACAAATGGATGCTGATGACTGAATAAAGGAAAGCTATGGTTAACAGGAGAACAGA
GAACAGTAACCAGTCGGTGTATCCCAATGTCGGTGCTGGACAAGTTTGTAGGACATCTGG
TATCTCTTGCAGGGTAACAACCTTTAAAGGAGAGTATAAAAGCAACAGCATTTCCACAGA
GCAAATATAACAATTCAAACATTTATAAAATGTGCTCTGGAGAAAAAAATTACAGTGGGC
ACAAAAAGAACCATTGAGTGGAAGTTACAGAGGCACATTTTGGCTCAGCGCTAACTGCTG
GAACAGGCTGCTGTGGGGTATCAACCCCCGAAGAAGTGCCACACGGATGCCAGAACATCT
TTCAACAGTGTGCTGGAAAGGATGCTTGCTCTGGAAGGAGGGCTGGAGGAAGGGACATCG
GTTACTTCCTCCTCTAAGAGTCTGTGATTAAAATGAGTTCATATGGAATATTTCCCGTTT
GCCACATGTATATCCATACTTTGACTTACTTGGAAGGAAATGATACATAGTCATTTTTTC
AGAAATAAAATG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               235-347, - strand, RNAz p=0.99957

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               235-347, - strand, RNAz p=0.99957

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               73-347, gnl|bosTau2|chr5 (22961076-22960798)
               

               
               73-347, gnl|Hg17|chr12 (48860661-48861263)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               73-347, gnl|bosTau2|chr5 (22961076-22960798)
               

               
               73-347, gnl|Hg17|chr12 (48860661-48861263)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ste (0.135208)
               

               
               lyg (0.133103)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ste (0.135208)
               

               
               lyg (0.133103)

	73-347, gnl\|bosTau2\|chr5 (22961076-22960798)
	73-347, gnl\|Hg17\|chr12 (48860661-48861263)