Non-Coding RNA Search

Ss1.1-rste26_l1.5

Sequence:


               
               AGCGCCATCAACTACATCGAGAGGTTGCAGGACCTGCTGCACCGGCTGGATCAGCAGGAC
AAAATGCAGGAGCTAGGCGTGGACCCCTTCAGCTACAGACCCAAGCAAGAGAATCTTGAG
GGTGCGGATTTCCTGCGCACCTGCAGCTCCCAGTGGCCAAGTGTTTCGGATCATTCCAGG
GGGCTCGTGATGACTGCCAAGGAAGGAGGGACAAACATTGATTCGTCAGCCTCGAGCAGC
CTTCGGTGCCTTTCTTCCATCGTGGACAGCATTTCCTCGGAGGAACACACGCTCCCCTGC
GTCGAGGAAGTGGGGGAGAAATAACTCGCGGCCGGAGACGGTCTCCACGCAGCAGCAAAA
GCCCACCCTCCTCCTCCTCCTCCGCCTAATCCTGTAGATGAGGTCACGTTACGTGAATAT
TTAGGAACCCTGACTCAGGAGCTCACGAAAGGGAAGGGGACATCTTCGCAAAGAAACTTC
TCGGAAGCTGTTGCGCACGCTCGGAGGAGAAGCCTCGCAGCCTTGGGCTTTTCTTCGGCG
AACTGCGAGTGGCTTAGATCTACAGCAGCCTTGGTTTTTGCTGGGTGGGCTCTGTAACAT
ATTTACGTTTCCTATGGTGATCCTTTTGTGCCCTGTGCAAAAGAAGTTCATTCCTGTCTA
AAGCAAAGTGGGAACGTCGCAACTGTTAGTGGGATTGAATGTATTTTTGTAAATAATCTT
AGTACTTTAATTTTTTTATGTCAACCTAAGAAATATATTTTAAACGTGGAGTGACGTATT
GTATACATAGCGTGCAAGGATCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCGCCATCAACTACATCGAGAGGTTGCAGGACCTGCTGCACCGGCTGGATCAGCAGGAC
AAAATGCAGGAGCTAGGCGTGGACCCCTTCAGCTACAGACCCAAGCAAGAGAATCTTGAG
GGTGCGGATTTCCTGCGCACCTGCAGCTCCCAGTGGCCAAGTGTTTCGGATCATTCCAGG
GGGCTCGTGATGACTGCCAAGGAAGGAGGGACAAACATTGATTCGTCAGCCTCGAGCAGC
CTTCGGTGCCTTTCTTCCATCGTGGACAGCATTTCCTCGGAGGAACACACGCTCCCCTGC
GTCGAGGAAGTGGGGGAGAAATAACTCGCGGCCGGAGACGGTCTCCACGCAGCAGCAAAA
GCCCACCCTCCTCCTCCTCCTCCGCCTAATCCTGTAGATGAGGTCACGTTACGTGAATAT
TTAGGAACCCTGACTCAGGAGCTCACGAAAGGGAAGGGGACATCTTCGCAAAGAAACTTC
TCGGAAGCTGTTGCGCACGCTCGGAGGAGAAGCCTCGCAGCCTTGGGCTTTTCTTCGGCG
AACTGCGAGTGGCTTAGATCTACAGCAGCCTTGGTTTTTGCTGGGTGGGCTCTGTAACAT
ATTTACGTTTCCTATGGTGATCCTTTTGTGCCCTGTGCAAAAGAAGTTCATTCCTGTCTA
AAGCAAAGTGGGAACGTCGCAACTGTTAGTGGGATTGAATGTATTTTTGTAAATAATCTT
AGTACTTTAATTTTTTTATGTCAACCTAAGAAATATATTTTAAACGTGGAGTGACGTATT
GTATACATAGCGTGCAAGGATCCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|28825813|gb|AAO46103.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|28825813|gb|AAO46103.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-114, gnl|bosTau2|chr5 (7981823-7981710)
               

               
               1-114, gnl|Hg17|chr12 (79604372-79604485)
               

               
               1-114, gnl|Mm7|chr10 (106956782-106956669)
               


               
               204-804, gnl|bosTau2|chr5 (7981115-7980526)
               

               
               204-804, gnl|Hg17|chr12 (79605087-79605686)
               

               
               204-804, gnl|Mm7|chr10 (106955957-106955375)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-114, gnl|bosTau2|chr5 (7981823-7981710)
               

               
               1-114, gnl|Hg17|chr12 (79604372-79604485)
               

               
               1-114, gnl|Mm7|chr10 (106956782-106956669)
               


               
               204-804, gnl|bosTau2|chr5 (7981115-7980526)
               

               
               204-804, gnl|Hg17|chr12 (79605087-79605686)
               

               
               204-804, gnl|Mm7|chr10 (106955957-106955375)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               sme (0.305437)
               

               
               mas (0.210305)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               ste (0.135208)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sme (0.305437)
               

               
               mas (0.210305)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               ste (0.135208)

	1-114, gnl\|bosTau2\|chr5 (7981823-7981710)
	1-114, gnl\|Hg17\|chr12 (79604372-79604485)
	1-114, gnl\|Mm7\|chr10 (106956782-106956669)

	204-804, gnl\|bosTau2\|chr5 (7981115-7980526)
	204-804, gnl\|Hg17\|chr12 (79605087-79605686)
	204-804, gnl\|Mm7\|chr10 (106955957-106955375)

	sme (0.305437)
	mas (0.210305)
	isp (0.150376)
	bfe (0.149858)
	ste (0.135208)