Non-Coding RNA Search

Ss1.1-rste26_p12.5

Sequence:


               
               CCGGGCGACCTCCGTGGGCAGCAGTCATGGGTCACTGCCTGGAAGTCCCTCATTGCCCCC
AGTGCAGGATGAGGTGTTTGAGTTCCCTGGCGTTGCTGCTGGACACCGAGACCTGGACAG
CAGAGCCATCACACTGGTCACAGGCTCCTCTCGCAAGATCTCCGTGCGGTTGCAGCGGGC
CACCACCAGCCAGGCCACCCAGACCGAACCTGTGTGGTCAGAAGCTGGCTGGGGAGACTC
AGGGTCCCACACCTTCCCCAAAATGAAATCCAAGTTCCATGACAAAGCAACAAAGGACAA
AGGCTTTGCCAAGTGGGAAAATGAGAAGCCCAGGGTACAGGCTGGTGTGGATGTTGTTGA
CCGAGGCACTGCATTTGAACTGGACCAGGAGGAAGCAGACATGGGTGAGACTAGACAGGA
CGGTGAGGACGGCTGACTTCAGGCTGAGGACCTTGAAGGCGATCGTGTTGGCATTTGGAA
AGAGCAAGATGAGAAACTCTGAAGAACCCTCCAGCTCTCAAGAAGTTATCTGAAAAGATA
GCTGGACATTTTACTGCCTTGTGACACTGTGGGATCTCTCTGATTAAACTGTGGGACAGA
GGATTTACCCTATGAACTATTTATTTCCTCCTCCCCTGCCCCTAGTTAGGTGCCCCAAAG
AGTGTGTTATGTAGTTGGTAGTTTTCTCTATCTTTCTCTAGAGCCACTTATATACGGGTG
AAATGAAATCTTCTGTACATGTACCTGATATTCATTTTCTAAACTCATACTTTGCTTTTT
CCGTGAGAATGTTATTTTAGTATTTTTATAAATGTTTGAGGGGGGCGTTTAATGAGGAGT
CAAATGAAGGGTCTTTTTGTGTGGTTTTAGGACTGGACCAGGACTTAACATTTTCTTGAG
GGATAAGAAGGCTCTTCGGGTCATGGAATGTAATGGTTCTTCTAATGATGGTCTGTTTCA
AGGAGAAGCTGTTTGCATTGTTCTGACTGTAACATTGCTATTATGATGTGTAACGAGTCA
CACTTTTATAGCCATATGTCTTACCAATTCTGTATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGGGCGACCTCCGTGGGCAGCAGTCATGGGTCACTGCCTGGAAGTCCCTCATTGCCCCC
AGTGCAGGATGAGGTGTTTGAGTTCCCTGGCGTTGCTGCTGGACACCGAGACCTGGACAG
CAGAGCCATCACACTGGTCACAGGCTCCTCTCGCAAGATCTCCGTGCGGTTGCAGCGGGC
CACCACCAGCCAGGCCACCCAGACCGAACCTGTGTGGTCAGAAGCTGGCTGGGGAGACTC
AGGGTCCCACACCTTCCCCAAAATGAAATCCAAGTTCCATGACAAAGCAACAAAGGACAA
AGGCTTTGCCAAGTGGGAAAATGAGAAGCCCAGGGTACAGGCTGGTGTGGATGTTGTTGA
CCGAGGCACTGCATTTGAACTGGACCAGGAGGAAGCAGACATGGGTGAGACTAGACAGGA
CGGTGAGGACGGCTGACTTCAGGCTGAGGACCTTGAAGGCGATCGTGTTGGCATTTGGAA
AGAGCAAGATGAGAAACTCTGAAGAACCCTCCAGCTCTCAAGAAGTTATCTGAAAAGATA
GCTGGACATTTTACTGCCTTGTGACACTGTGGGATCTCTCTGATTAAACTGTGGGACAGA
GGATTTACCCTATGAACTATTTATTTCCTCCTCCCCTGCCCCTAGTTAGGTGCCCCAAAG
AGTGTGTTATGTAGTTGGTAGTTTTCTCTATCTTTCTCTAGAGCCACTTATATACGGGTG
AAATGAAATCTTCTGTACATGTACCTGATATTCATTTTCTAAACTCATACTTTGCTTTTT
CCGTGAGAATGTTATTTTAGTATTTTTATAAATGTTTGAGGGGGGCGTTTAATGAGGAGT
CAAATGAAGGGTCTTTTTGTGTGGTTTTAGGACTGGACCAGGACTTAACATTTTCTTGAG
GGATAAGAAGGCTCTTCGGGTCATGGAATGTAATGGTTCTTCTAATGATGGTCTGTTTCA
AGGAGAAGCTGTTTGCATTGTTCTGACTGTAACATTGCTATTATGATGTGTAACGAGTCA
CACTTTTATAGCCATATGTCTTACCAATTCTGTATC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               138-257, + strand, RNAz p=0.586243

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               138-257, + strand, RNAz p=0.586243

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               59-428, gnl|bosTau2|chr11 (12883585-12883216)
               

               
               59-428, gnl|Hg17|chr2 (33695386-33695749)
               

               
               59-428, gnl|Mm7|chr17 (73815360-73815726)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               59-428, gnl|bosTau2|chr11 (12883585-12883216)
               

               
               59-428, gnl|Hg17|chr2 (33695386-33695749)
               

               
               59-428, gnl|Mm7|chr17 (73815360-73815726)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               fty (0.17584)
               

               
               csp (0.161186)
               

               
               isp (0.150376)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fty (0.17584)
               

               
               csp (0.161186)
               

               
               isp (0.150376)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)

	59-428, gnl\|bosTau2\|chr11 (12883585-12883216)
	59-428, gnl\|Hg17\|chr2 (33695386-33695749)
	59-428, gnl\|Mm7\|chr17 (73815360-73815726)

	fty (0.17584)
	csp (0.161186)
	isp (0.150376)
	liv (0.146284)
	spl (0.143184)
	lnt (0.142308)
	ssp (0.13552)
	ste (0.135208)