Non-Coding RNA Search

Ss1.1-rste26_p15.5

Sequence:


               
               TTCAGAAAGCTGAAGGTTTTTATCCTGAAGGAGCAGAATCATGACCACTCCCTCCCTGAG
ATGAAATCTAGGAGTGTTGATTGCTTTGGAAGTAGTGTTCACCCCTAAATGTATTGTTTT
ATGGCTGAAATAGGAAGCTAAGGAAGAGCCCTACCTGGATCAGATTTTATGTCACATGGC
AACAAATAAGGAAGATGAAATTATTTAGTGGATGTCCTACATTTGAGGTTTTTTTTTTTT
TTTTTTAAATAAAGTTTCAGCCTATGGTAGGAAACAAAGTGTCTTTTAAATAGAGGTAGT
TATATATTTTTTCCTTATCTAGGCTGTGATTTTAAAGAAGGATGTGTCAGTATTGACTAA
AGATATTACTGTTAGCTAGATTCATTTTTATAATCATGAATCCTCTTGAGTGCTAGTAGA
GATTTTAATCCTGATCTGCCCTGAAACATATGCGTATAAAGACCTGATAATTACAGGTTT
AGAAACCCTTTTAAGGAAGAAACACTGGAAATCTCTGCTAACACAAAGATATTTAAAGGT
GTACATAGTAGGTGCTCAACAAATTTATTGAATGAGCGAGTGAATGGAAAAAACTGCTTG
GGAGAGTCCAAAGTGAGCAGGAATTCTCCATTTCTACTTTTGTCACAAGCCACATTTGGT
TGTAAATAGGCCTTTTTCTACTTCCAGGCAGCAGACTGTCAAGAAGCCTGAAGAGAGCAA
TTTCTCTGACAAGACAGAGTAGCTACTTTTTACCAGGGGTGGGCAATGCGTTGGCAACCA
AATTTGGCCTAGTCTGTTTGGTATGGTGCAAGCTAACAATGGACTTTACATTTTTAAAGG
GTTGTAAAAGAATATGTGACAGAGACCTTATGTGACCTATAAAGCCTAAAATATTTACTA
CCTGGCTCTTTGGAGATAATGTTTGCTGACCTCTGTTTTATACCATTACCTATGAGATTA
ACAAAAATTTTTACCTTTTTGCAGAAGGTAAAAAGCATGGTGAAGGAGAAGATGTGTCAC
TTTTCTACACTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCAGAAAGCTGAAGGTTTTTATCCTGAAGGAGCAGAATCATGACCACTCCCTCCCTGAG
ATGAAATCTAGGAGTGTTGATTGCTTTGGAAGTAGTGTTCACCCCTAAATGTATTGTTTT
ATGGCTGAAATAGGAAGCTAAGGAAGAGCCCTACCTGGATCAGATTTTATGTCACATGGC
AACAAATAAGGAAGATGAAATTATTTAGTGGATGTCCTACATTTGAGGTTTTTTTTTTTT
TTTTTTAAATAAAGTTTCAGCCTATGGTAGGAAACAAAGTGTCTTTTAAATAGAGGTAGT
TATATATTTTTTCCTTATCTAGGCTGTGATTTTAAAGAAGGATGTGTCAGTATTGACTAA
AGATATTACTGTTAGCTAGATTCATTTTTATAATCATGAATCCTCTTGAGTGCTAGTAGA
GATTTTAATCCTGATCTGCCCTGAAACATATGCGTATAAAGACCTGATAATTACAGGTTT
AGAAACCCTTTTAAGGAAGAAACACTGGAAATCTCTGCTAACACAAAGATATTTAAAGGT
GTACATAGTAGGTGCTCAACAAATTTATTGAATGAGCGAGTGAATGGAAAAAACTGCTTG
GGAGAGTCCAAAGTGAGCAGGAATTCTCCATTTCTACTTTTGTCACAAGCCACATTTGGT
TGTAAATAGGCCTTTTTCTACTTCCAGGCAGCAGACTGTCAAGAAGCCTGAAGAGAGCAA
TTTCTCTGACAAGACAGAGTAGCTACTTTTTACCAGGGGTGGGCAATGCGTTGGCAACCA
AATTTGGCCTAGTCTGTTTGGTATGGTGCAAGCTAACAATGGACTTTACATTTTTAAAGG
GTTGTAAAAGAATATGTGACAGAGACCTTATGTGACCTATAAAGCCTAAAATATTTACTA
CCTGGCTCTTTGGAGATAATGTTTGCTGACCTCTGTTTTATACCATTACCTATGAGATTA
ACAAAAATTTTTACCTTTTTGCAGAAGGTAAAAAGCATGGTGAAGGAGAAGATGTGTCAC
TTTTCTACACTC

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               59-1032, gnl|bosTau2|chr19 (37607238-37608189)
               

               
               59-1032, gnl|Hg17|chr17 (40111358-40110401)
               

               
               59-1032, gnl|Mm7|chr11 (102794915-102793793)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               59-1032, gnl|bosTau2|chr19 (37607238-37608189)
               

               
               59-1032, gnl|Hg17|chr17 (40111358-40110401)
               

               
               59-1032, gnl|Mm7|chr11 (102794915-102793793)

Expressed library(ies): 15 entry(ies)

More info

Expressed library(ies): 15 entry(ies)

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               gul (0.532765)
               

               
               elu (0.385356)
               

               
               ste (0.270416)
               

               
               sto (0.179824)
               

               
               ill (0.175593)
               

               
               rec (0.17307)
               

               
               eye (0.170503)
               

               
               tbr (0.154178)
               

               
               fat (0.147427)
               

               
               lin (0.145603)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               med (0.116252)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)

Expressed library(ies): 15 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               gul (0.532765)
               

               
               elu (0.385356)
               

               
               ste (0.270416)
               

               
               sto (0.179824)
               

               
               ill (0.175593)
               

               
               rec (0.17307)
               

               
               eye (0.170503)
               

               
               tbr (0.154178)
               

               
               fat (0.147427)
               

               
               lin (0.145603)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               med (0.116252)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)

	59-1032, gnl\|bosTau2\|chr19 (37607238-37608189)
	59-1032, gnl\|Hg17\|chr17 (40111358-40110401)
	59-1032, gnl\|Mm7\|chr11 (102794915-102793793)

	gul (0.532765)
	elu (0.385356)
	ste (0.270416)
	sto (0.179824)
	ill (0.175593)
	rec (0.17307)
	eye (0.170503)
	tbr (0.154178)
	fat (0.147427)
	lin (0.145603)
	thg (0.126791)
	bla (0.124347)
	med (0.116252)
	spc (0.113366)
	eje (0.0988338)