Ss1.1-rste27_i3.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCTGATGGGGCTGTTCTGCTGCCGGGCGCTCTTGCCGCAGGGGAGCCGCTTTTCACTGCT GCCGCCGTTCTTGCCGCCTCATGGCGGCCATCGGGGTTCACCTGGGCTGCACATCAGCCT GTGTGGCCGTCTATAAGGATGGACGGGCTGATGTGGTTGCAAACGACGCCGGTGACAGAG TTACTCCAGCTGTTGTTGCTTACACAGAAAATGAAGAGGTTGTTGGATTGGCAGCAAAAC AAAGTAGAATAAGGAATATTTCAAACACAGTAATGAAAGTAAAGCAGATCCTTGGCAGAA GCTCTGATGATCCACAGGCTCAGAAATACATCTCGGAAAGTAAATGTTTAGTCATTGAAA AGAATGGGAAGTTACGATATGAAATAGATACTGGAGAAGAAATGAAATTTGTCAACCCAG AAGATGTTGCCAGACTGATATTTAGTAAAATGAAAGAAACAGCACATTCTGTCTTGGGCC CAGATGCAAATGATGTTGTTATTACTGTTCCATTTGATTTTGGAGAAAAGCAAAAAAATG CTCTTGGGGAGGCAGCCAGAGCTGCTGGCTTTAATGTTTTGCGACTAATCCACGAACCAT CTGCAGCTCTTTTGGCTTATGGAATTGGACAAGACTCTCCCACTGGAAAAAGCAATATTC TGGTATTCAAACTTGGAGGCACATCCTTATCTATCAGTGTCATGCAAGTTAACAGTGGAA TATATCGTGTTCTTTCAACAAACACTGATAATAACATCGGAGGCACACATTTCACAGAAA CCTTAGCACAGTACCTAGCTTCTGAGTTTCAGAGATCGTTCAAACATGACGTGAGAGGAA ATGCCCGAGCCATGATGAAATTGATGAACAGTGCTGACACTGCAAAACATTCTTTGTCAA CACTGGGAAGTGCCAACTGTTTCCTTGACTCGCTGTATGAAGGTCAGGATTTCGACTGCA ATGTGTCCAGAGCAAGATTTGAACTTCTCTGTTCTCCACTTTTTAATAAATGCATAGAAG CAATCAGAGGACTCTTAGAACAAAGTGGATTTACAGCAGATGATATCAACAAGGTTGTCC TTTGTGGAGGGTCTTCTCGAATCCCCAGGCTACAGCAGATGATTAAAGAGCTTTTCCCAG CTGTTGAGCTTCTAAACTCTATCCCTCCTGATGAGGTCATCCCTATTGGTGCAGCTATAG AAGCAGGAATCCTTATTGGGAAAGAAAACCTTTTAGTGGAAGACTCTCTTAAGATTGAGT GTTCAGCCAAAGATATTTTAGTTAAAGGAGTCGATGAATCAGGAGCCAACAGTTTCAGAG TCCTGTTTCCATCGGGGACTCCTCTGCCAGCTCGAAGACAGCACATGCTACAGGCGCCTG GAAGTATATCCTCAGTGTGTCTGGAACTCTATGAGTCTGACGGGAAAAACTCTGCAAAAG AGGAAAACAAGTTTGCACAGGTTGTGCTCCAGGATTTAGATAAAAAAGAAAATGGATTAC GTGATATATTAGCTGTTCTTACTATGAAAAGGGATGGATCTTTACATGTGACATGCACAG ATCAAGAGACCGGAAAATGTGAGGCAATCACTATCGAGGTGGCATCTTAGTGTTTTAGAG AAAGCATGAATTTTTTAGAACTAGAATATCAACATTATTTGGTTTTGTTTTATAAATGAT GTTTATATTAAAATACTTTTTGAATGAACTGTATGATCTGTGTTTCTATTAAACTACTAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCTGATGGGGCTGTTCTGCTGCCGGGCGCTCTTGCCGCAGGGGAGCCGCTTTTCACTGCT GCCGCCGTTCTTGCCGCCTCATGGCGGCCATCGGGGTTCACCTGGGCTGCACATCAGCCT GTGTGGCCGTCTATAAGGATGGACGGGCTGATGTGGTTGCAAACGACGCCGGTGACAGAG TTACTCCAGCTGTTGTTGCTTACACAGAAAATGAAGAGGTTGTTGGATTGGCAGCAAAAC AAAGTAGAATAAGGAATATTTCAAACACAGTAATGAAAGTAAAGCAGATCCTTGGCAGAA GCTCTGATGATCCACAGGCTCAGAAATACATCTCGGAAAGTAAATGTTTAGTCATTGAAA AGAATGGGAAGTTACGATATGAAATAGATACTGGAGAAGAAATGAAATTTGTCAACCCAG AAGATGTTGCCAGACTGATATTTAGTAAAATGAAAGAAACAGCACATTCTGTCTTGGGCC CAGATGCAAATGATGTTGTTATTACTGTTCCATTTGATTTTGGAGAAAAGCAAAAAAATG CTCTTGGGGAGGCAGCCAGAGCTGCTGGCTTTAATGTTTTGCGACTAATCCACGAACCAT CTGCAGCTCTTTTGGCTTATGGAATTGGACAAGACTCTCCCACTGGAAAAAGCAATATTC TGGTATTCAAACTTGGAGGCACATCCTTATCTATCAGTGTCATGCAAGTTAACAGTGGAA TATATCGTGTTCTTTCAACAAACACTGATAATAACATCGGAGGCACACATTTCACAGAAA CCTTAGCACAGTACCTAGCTTCTGAGTTTCAGAGATCGTTCAAACATGACGTGAGAGGAA ATGCCCGAGCCATGATGAAATTGATGAACAGTGCTGACACTGCAAAACATTCTTTGTCAA CACTGGGAAGTGCCAACTGTTTCCTTGACTCGCTGTATGAAGGTCAGGATTTCGACTGCA ATGTGTCCAGAGCAAGATTTGAACTTCTCTGTTCTCCACTTTTTAATAAATGCATAGAAG CAATCAGAGGACTCTTAGAACAAAGTGGATTTACAGCAGATGATATCAACAAGGTTGTCC TTTGTGGAGGGTCTTCTCGAATCCCCAGGCTACAGCAGATGATTAAAGAGCTTTTCCCAG CTGTTGAGCTTCTAAACTCTATCCCTCCTGATGAGGTCATCCCTATTGGTGCAGCTATAG AAGCAGGAATCCTTATTGGGAAAGAAAACCTTTTAGTGGAAGACTCTCTTAAGATTGAGT GTTCAGCCAAAGATATTTTAGTTAAAGGAGTCGATGAATCAGGAGCCAACAGTTTCAGAG TCCTGTTTCCATCGGGGACTCCTCTGCCAGCTCGAAGACAGCACATGCTACAGGCGCCTG GAAGTATATCCTCAGTGTGTCTGGAACTCTATGAGTCTGACGGGAAAAACTCTGCAAAAG AGGAAAACAAGTTTGCACAGGTTGTGCTCCAGGATTTAGATAAAAAAGAAAATGGATTAC GTGATATATTAGCTGTTCTTACTATGAAAAGGGATGGATCTTTACATGTGACATGCACAG ATCAAGAGACCGGAAAATGTGAGGCAATCACTATCGAGGTGGCATCTTAGTGTTTTAGAG AAAGCATGAATTTTTTAGAACTAGAATATCAACATTATTTGGTTTTGTTTTATAAATGAT GTTTATATTAAAATACTTTTTGAATGAACTGTATGATCTGTGTTTCTATTAAACTACTAT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 3-120, + strand, RNAz p=0.589734 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 3-120, + strand, RNAz p=0.589734 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of NM_016299, + |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 3-138, gnl|bosTau2|chr13 (17417140-17417005) | |
| 3-138, gnl|Hg17|chr10 (14920329-14920465) | |
| 3-138, gnl|Mm7|chr2 (3430039-3429905) | |
| 351-456, gnl|bosTau2|chr13 (17407015-17406910) | |
| 351-456, gnl|Hg17|chr10 (14930795-14930900) | |
| 351-456, gnl|Mm7|chr2 (3419871-3419766) | |
| 650-814, gnl|bosTau2|chr13 (17403769-17403605) | |
| 650-814, gnl|canFam2|chr2 (24616968-24616761) | |
| 650-814, gnl|danRer3|chr4 (9829146-9829382) | |
| 650-814, gnl|dasNov1|scaffold_16637 (15810-16038) | |
| 650-814, gnl|galGal2|chr1 (3328824-3328620) | |
| 650-814, gnl|hg17|chr10 (14934346-14934569) | |
| 650-814, gnl|Hg17|chr10 (14934372-14934536) | |
| 650-814, gnl|mm7|chr2 (3415490-3415274) | |
| 650-814, gnl|Mm7|chr2 (3415458-3415294) | |
| 650-814, gnl|monDom2|scaffold_30 (14309879-14310107) | |
| 650-814, gnl|panTro1|chr8 (15402441-15402664) | |
| 650-814, gnl|rheMac2|chr9 (15129500-15129719) | |
| 650-814, gnl|rn3|chr17 (85872511-85872716) | |
| 650-814, gnl|xenTro1|scaffold_200 (324693-324515) | |
| 1072-1285, gnl|bosTau2|chr13 (17396782-17396569) | |
| 1072-1285, gnl|Hg17|chr10 (14949086-14949299) | |
| 1072-1285, gnl|Mm7|chr2 (3409007-3408794) | |
| 1287-1462, gnl|bosTau2|chr13 (17396163-17395988) | |
| 1287-1462, gnl|Hg17|chr10 (14949741-14949916) | |
| 1287-1462, gnl|Mm7|chr2 (3408382-3408207) | |
| 1502-1736, gnl|bosTau2|chr13 (17393109-17392880) | |
| 1502-1736, gnl|dasNov1|scaffold_6132 (80490-80699) | |
| 1502-1736, gnl|Hg17|chr10 (14953502-14953732) | |
| 1502-1736, gnl|hg17|chr11 (62916758-62916979) | |
| 1502-1736, gnl|loxAfr1|scaffold_43581 (12632-12417) | |
| 1502-1736, gnl|mm7|chr2 (3406119-3406336) | |
| 1502-1736, gnl|Mm7|chr2 (3406368-3406138) | |
| 1502-1736, gnl|monDom2|scaffold_30 (14324510-14324292) | |
| 1502-1736, gnl|oryCun1|scaffold_213521 (8325-8546) | |
| 1502-1736, gnl|panTro1|chr9 (63914671-63914892) | |
| 1502-1736, gnl|rheMac2|chr14 (11041845-11041628) | |
| 1502-1736, gnl|rn3|chr17 (85880215-85879997) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-138, gnl|bosTau2|chr13 (17417140-17417005) | |
| 3-138, gnl|Hg17|chr10 (14920329-14920465) | |
| 3-138, gnl|Mm7|chr2 (3430039-3429905) | |
| 351-456, gnl|bosTau2|chr13 (17407015-17406910) | |
| 351-456, gnl|Hg17|chr10 (14930795-14930900) | |
| 351-456, gnl|Mm7|chr2 (3419871-3419766) | |
| 650-814, gnl|bosTau2|chr13 (17403769-17403605) | |
| 650-814, gnl|canFam2|chr2 (24616968-24616761) | |
| 650-814, gnl|danRer3|chr4 (9829146-9829382) | |
| 650-814, gnl|dasNov1|scaffold_16637 (15810-16038) | |
| 650-814, gnl|galGal2|chr1 (3328824-3328620) | |
| 650-814, gnl|hg17|chr10 (14934346-14934569) | |
| 650-814, gnl|Hg17|chr10 (14934372-14934536) | |
| 650-814, gnl|mm7|chr2 (3415490-3415274) | |
| 650-814, gnl|Mm7|chr2 (3415458-3415294) | |
| 650-814, gnl|monDom2|scaffold_30 (14309879-14310107) | |
| 650-814, gnl|panTro1|chr8 (15402441-15402664) | |
| 650-814, gnl|rheMac2|chr9 (15129500-15129719) | |
| 650-814, gnl|rn3|chr17 (85872511-85872716) | |
| 650-814, gnl|xenTro1|scaffold_200 (324693-324515) | |
| 1072-1285, gnl|bosTau2|chr13 (17396782-17396569) | |
| 1072-1285, gnl|Hg17|chr10 (14949086-14949299) | |
| 1072-1285, gnl|Mm7|chr2 (3409007-3408794) | |
| 1287-1462, gnl|bosTau2|chr13 (17396163-17395988) | |
| 1287-1462, gnl|Hg17|chr10 (14949741-14949916) | |
| 1287-1462, gnl|Mm7|chr2 (3408382-3408207) | |
| 1502-1736, gnl|bosTau2|chr13 (17393109-17392880) | |
| 1502-1736, gnl|dasNov1|scaffold_6132 (80490-80699) | |
| 1502-1736, gnl|Hg17|chr10 (14953502-14953732) | |
| 1502-1736, gnl|hg17|chr11 (62916758-62916979) | |
| 1502-1736, gnl|loxAfr1|scaffold_43581 (12632-12417) | |
| 1502-1736, gnl|mm7|chr2 (3406119-3406336) | |
| 1502-1736, gnl|Mm7|chr2 (3406368-3406138) | |
| 1502-1736, gnl|monDom2|scaffold_30 (14324510-14324292) | |
| 1502-1736, gnl|oryCun1|scaffold_213521 (8325-8546) | |
| 1502-1736, gnl|panTro1|chr9 (63914671-63914892) | |
| 1502-1736, gnl|rheMac2|chr14 (11041845-11041628) | |
| 1502-1736, gnl|rn3|chr17 (85880215-85879997) |
| Expressed library(ies): 12 entry(ies) | More info |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
| sin (0.524843) | |
| cte (0.29274) | |
| ste (0.270416) | |
| bla (0.248694) | |
| nep (0.183925) | |
| ill (0.175593) | |
| cje (0.165235) | |
| isp (0.150376) | |
| liv (0.146284) | |
| ssp (0.13552) | |
| cty (0.10408) | |
| ldo (0.0970026) |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sin (0.524843) | |
| cte (0.29274) | |
| ste (0.270416) | |
| bla (0.248694) | |
| nep (0.183925) | |
| ill (0.175593) | |
| cje (0.165235) | |
| isp (0.150376) | |
| liv (0.146284) | |
| ssp (0.13552) | |
| cty (0.10408) | |
| ldo (0.0970026) |