Ss1.1-rste29_b7.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTTGCCCCTCAATGGTACCAGGCTTCAGAAGGACATGGCCAAGACCTTGCTGTCGCTGCA TGGCTCCATAGTTGTGGGAATTGACTATGACTGCCGGGAGAGGATGGTGTACTGGACAGA CGTTGCTGGACGGACAATTAGCCGTGCCAGTCTGGAACCAGGAGCAGAGCCCGAGACCAT CGTTAACTCAGGTCTGATAAGCCCCGAAGGACTTGCCATTGACCACTTCCGTGGAACAAT GTACTGGACAGACAGCGGCCTGGATAAGATAGAGAGGGCCAGGCTGGACGGCTCTGAGCG CAGGGCCCTCTTCCACACGGACCTGGTGAACCCCCGCGCCATCGCTGTGGATCCAATCCG AGGCAACTTGTACTGGACAGACTGGAATCGAGAAGCTCCTAAAATTGAAATGTCGTCTTT AGATGGAGAGAACAGAAGAATTCTAGTGAATAAAGACATTGGACTACCCAATGGTTTAAC CTTTGACCCCTTCTCCAAATTGCTCTGCTGGGCAGATGCAGGAACTAAAAAACTGGAGTG TACACTACCAGACGGAACTGGACGGCGTGTCATTCAGAACAACCTCAACTATCCCTTCAG TATTGTGAGCTATGCAGATCACTTCTACCACACCGACTGGAGAAGGGACGGTGTAATATC AGTAAATAGAGACAGTGGCCAATTCACTGATGAGTATCTCCCAGAGCAGCGATCTCATCT CTACGGGATAACTGCTGTCTACCCCTACTGCCCAACAGGAAGAAAGTAAATATGGTATTA CAAAGGACTTGAGTTTACAATCGGAATCTGGACCCTAAAGAACATTTACTGCGAACAAAG GTGAAGAAAGTGAAAAAGGAATTGGCCATTAGAAGTTTTTGGACATACAAGATGAATATT TTAAAGCAAAAAGACTAAGTATATTTTGTGAAAAGTTTATACCTCAATCTTTACTACTGT ATTTTTAAAAACAAAAGTTATTTCAAGTTTAAAAAAGGTAAGAGAATTTTAATTGTTGCT TATTAAAGCAACTTTTTATAAACATTTGTATCATATTTAAAGGTCAAATCCATTCAACAA GAACCAATTAGAGCATGTTAAGACCCTAAATCTGATTTTTAATATGGATTCTTTCTGGCC AAGAAATTAAAGCACACGTGATCAATACTAAAGATCATAAACCTTGACGTAGTTGGAGAA GGCTATGCAGAACTGATGGGGAAGAACCAACTTATTTAAAGTTTCCCACAAAAGTTCTAA GATTTTTTTTTTTACCTCTGCATCAGTGCATTTCTATTTATATTAAAAGGTGCTAGAATG TTTCAATTTGTATTTTCTGATCCTGTTAAGTCCCTCTATAGAATTACCCACAAAAATTAC ATTTATATATAAATATCAAAGATGTAACAGTTCTCAAATTTTCTAGATTACTCCAATAAA ATATTTTAAGTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTTGCCCCTCAATGGTACCAGGCTTCAGAAGGACATGGCCAAGACCTTGCTGTCGCTGCA TGGCTCCATAGTTGTGGGAATTGACTATGACTGCCGGGAGAGGATGGTGTACTGGACAGA CGTTGCTGGACGGACAATTAGCCGTGCCAGTCTGGAACCAGGAGCAGAGCCCGAGACCAT CGTTAACTCAGGTCTGATAAGCCCCGAAGGACTTGCCATTGACCACTTCCGTGGAACAAT GTACTGGACAGACAGCGGCCTGGATAAGATAGAGAGGGCCAGGCTGGACGGCTCTGAGCG CAGGGCCCTCTTCCACACGGACCTGGTGAACCCCCGCGCCATCGCTGTGGATCCAATCCG AGGCAACTTGTACTGGACAGACTGGAATCGAGAAGCTCCTAAAATTGAAATGTCGTCTTT AGATGGAGAGAACAGAAGAATTCTAGTGAATAAAGACATTGGACTACCCAATGGTTTAAC CTTTGACCCCTTCTCCAAATTGCTCTGCTGGGCAGATGCAGGAACTAAAAAACTGGAGTG TACACTACCAGACGGAACTGGACGGCGTGTCATTCAGAACAACCTCAACTATCCCTTCAG TATTGTGAGCTATGCAGATCACTTCTACCACACCGACTGGAGAAGGGACGGTGTAATATC AGTAAATAGAGACAGTGGCCAATTCACTGATGAGTATCTCCCAGAGCAGCGATCTCATCT CTACGGGATAACTGCTGTCTACCCCTACTGCCCAACAGGAAGAAAGTAAATATGGTATTA CAAAGGACTTGAGTTTACAATCGGAATCTGGACCCTAAAGAACATTTACTGCGAACAAAG GTGAAGAAAGTGAAAAAGGAATTGGCCATTAGAAGTTTTTGGACATACAAGATGAATATT TTAAAGCAAAAAGACTAAGTATATTTTGTGAAAAGTTTATACCTCAATCTTTACTACTGT ATTTTTAAAAACAAAAGTTATTTCAAGTTTAAAAAAGGTAAGAGAATTTTAATTGTTGCT TATTAAAGCAACTTTTTATAAACATTTGTATCATATTTAAAGGTCAAATCCATTCAACAA GAACCAATTAGAGCATGTTAAGACCCTAAATCTGATTTTTAATATGGATTCTTTCTGGCC AAGAAATTAAAGCACACGTGATCAATACTAAAGATCATAAACCTTGACGTAGTTGGAGAA GGCTATGCAGAACTGATGGGGAAGAACCAACTTATTTAAAGTTTCCCACAAAAGTTCTAA GATTTTTTTTTTTACCTCTGCATCAGTGCATTTCTATTTATATTAAAAGGTGCTAGAATG TTTCAATTTGTATTTTCTGATCCTGTTAAGTCCCTCTATAGAATTACCCACAAAAATTAC ATTTATATATAAATATCAAAGATGTAACAGTTCTCAAATTTTCTAGATTACTCCAATAAA ATATTTTAAGTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 183-301, - strand, RNAz p=0.803147 | |
| 402-527, + strand, RNAz p=0.759443 | |
| 644-754, + strand, RNAz p=0.64 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 183-301, - strand, RNAz p=0.803147 | |
| 402-527, + strand, RNAz p=0.759443 | |
| 644-754, + strand, RNAz p=0.64 |
| Aligned organism(s): 43 entry(ies) | More info |
| Aligned organism(s): 43 entry(ies) | Help | Less info |
| 183-359, gnl|bosTau2|chr10 (29662904-29663080) | |
| 183-359, gnl|canFam2|chr8 (31249219-31249429) | |
| 183-359, gnl|danRer3|chr14 (33486051-33485869) | |
| 183-359, gnl|dasNov1|scaffold_31788 (9018-8805) | |
| 183-359, gnl|echTel1|scaffold_317370 (86306-86092) | |
| 183-359, gnl|fr1|chrUn (222141266-222141081) | |
| 183-359, gnl|galGal2|chr5 (54776127-54776306) | |
| 183-359, gnl|hg17|chr14 (51547340-51547553) | |
| 183-359, gnl|Hg17|chr14 (51547525-51547348) | |
| 183-359, gnl|loxAfr1|scaffold_11758 (11076-10892) | |
| 183-359, gnl|mm7|chr14 (17464002-17463794) | |
| 183-359, gnl|Mm7|chr14 (17463819-17463992) | |
| 183-359, gnl|monDom2|scaffold_73 (8152087-8152300) | |
| 183-359, gnl|oryCun1|scaffold_203177 (193622-193834) | |
| 183-359, gnl|panTro1|chr15 (50960566-50960779) | |
| 183-359, gnl|rheMac2|chr7 (115030173-115030378) | |
| 183-359, gnl|rn3|chr15 (4805660-4805870) | |
| 183-359, gnl|tetNig1|chr3 (3733715-3733898) | |
| 183-359, gnl|xenTro1|scaffold_355 (16680-16863) | |
| 363-527, gnl|bosTau2|chr10 (29663730-29663894) | |
| 363-527, gnl|Hg17|chr14 (51544436-51544272) | |
| 363-527, gnl|Mm7|chr14 (17465908-17466072) | |
| 644-754, gnl|bosTau2|chr10 (29666459-29666569) | |
| 644-754, gnl|canFam2|chr8 (31246313-31246443) | |
| 644-754, gnl|danRer3|chr12 (11622481-11622358) | |
| 644-754, gnl|dasNov1|scaffold_31788 (14461-14331) | |
| 644-754, gnl|echTel1|scaffold_317370 (89694-89568) | |
| 644-754, gnl|fr1|chrUn (222143127-222143002) | |
| 644-754, gnl|galGal2|chr5 (54774303-54774433) | |
| 644-754, gnl|hg17|chr14 (51542200-51542330) | |
| 644-754, gnl|Hg17|chr14 (51542319-51542209) | |
| 644-754, gnl|mm7|chr14 (17469055-17468925) | |
| 644-754, gnl|Mm7|chr14 (17468934-17469044) | |
| 644-754, gnl|monDom2|scaffold_73 (8141673-8141803) | |
| 644-754, gnl|oryCun1|scaffold_203177 (190187-190317) | |
| 644-754, gnl|panTro1|chr15 (50955442-50955572) | |
| 644-754, gnl|rheMac2|chr7 (115025037-115025167) | |
| 644-754, gnl|rn3|chr15 (4801854-4801984) | |
| 644-754, gnl|tetNig1|chr3 (3731787-3731908) | |
| 644-754, gnl|xenTro1|scaffold_355 (14725-14857) | |
| 785-1447, gnl|bosTau2|chr10 (29666828-29667492) | |
| 785-1447, gnl|Hg17|chr14 (51541949-51541287) | |
| 785-1447, gnl|Mm7|chr14 (17469196-17469759) |
| Aligned organism(s): 43 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 183-359, gnl|bosTau2|chr10 (29662904-29663080) | |
| 183-359, gnl|canFam2|chr8 (31249219-31249429) | |
| 183-359, gnl|danRer3|chr14 (33486051-33485869) | |
| 183-359, gnl|dasNov1|scaffold_31788 (9018-8805) | |
| 183-359, gnl|echTel1|scaffold_317370 (86306-86092) | |
| 183-359, gnl|fr1|chrUn (222141266-222141081) | |
| 183-359, gnl|galGal2|chr5 (54776127-54776306) | |
| 183-359, gnl|hg17|chr14 (51547340-51547553) | |
| 183-359, gnl|Hg17|chr14 (51547525-51547348) | |
| 183-359, gnl|loxAfr1|scaffold_11758 (11076-10892) | |
| 183-359, gnl|mm7|chr14 (17464002-17463794) | |
| 183-359, gnl|Mm7|chr14 (17463819-17463992) | |
| 183-359, gnl|monDom2|scaffold_73 (8152087-8152300) | |
| 183-359, gnl|oryCun1|scaffold_203177 (193622-193834) | |
| 183-359, gnl|panTro1|chr15 (50960566-50960779) | |
| 183-359, gnl|rheMac2|chr7 (115030173-115030378) | |
| 183-359, gnl|rn3|chr15 (4805660-4805870) | |
| 183-359, gnl|tetNig1|chr3 (3733715-3733898) | |
| 183-359, gnl|xenTro1|scaffold_355 (16680-16863) | |
| 363-527, gnl|bosTau2|chr10 (29663730-29663894) | |
| 363-527, gnl|Hg17|chr14 (51544436-51544272) | |
| 363-527, gnl|Mm7|chr14 (17465908-17466072) | |
| 644-754, gnl|bosTau2|chr10 (29666459-29666569) | |
| 644-754, gnl|canFam2|chr8 (31246313-31246443) | |
| 644-754, gnl|danRer3|chr12 (11622481-11622358) | |
| 644-754, gnl|dasNov1|scaffold_31788 (14461-14331) | |
| 644-754, gnl|echTel1|scaffold_317370 (89694-89568) | |
| 644-754, gnl|fr1|chrUn (222143127-222143002) | |
| 644-754, gnl|galGal2|chr5 (54774303-54774433) | |
| 644-754, gnl|hg17|chr14 (51542200-51542330) | |
| 644-754, gnl|Hg17|chr14 (51542319-51542209) | |
| 644-754, gnl|mm7|chr14 (17469055-17468925) | |
| 644-754, gnl|Mm7|chr14 (17468934-17469044) | |
| 644-754, gnl|monDom2|scaffold_73 (8141673-8141803) | |
| 644-754, gnl|oryCun1|scaffold_203177 (190187-190317) | |
| 644-754, gnl|panTro1|chr15 (50955442-50955572) | |
| 644-754, gnl|rheMac2|chr7 (115025037-115025167) | |
| 644-754, gnl|rn3|chr15 (4801854-4801984) | |
| 644-754, gnl|tetNig1|chr3 (3731787-3731908) | |
| 644-754, gnl|xenTro1|scaffold_355 (14725-14857) | |
| 785-1447, gnl|bosTau2|chr10 (29666828-29667492) | |
| 785-1447, gnl|Hg17|chr14 (51541949-51541287) | |
| 785-1447, gnl|Mm7|chr14 (17469196-17469759) |
| Expressed library(ies): 23 entry(ies) | More info |
| Expressed library(ies): 23 entry(ies) | Help | Less info |
| fat (0.737137) | |
| kid (0.518941) | |
| ski (0.440205) | |
| amn (0.417711) | |
| ova (0.387397) | |
| ese (0.379507) | |
| jca (0.34188) | |
| vin (0.332557) | |
| bla (0.248694) | |
| cty (0.20816) | |
| hea (0.204499) | |
| cmu (0.186393) | |
| mcp (0.170648) | |
| eye (0.170503) | |
| tbr (0.154178) | |
| lun (0.150489) | |
| bfe (0.149858) | |
| ste (0.135208) | |
| pla (0.133672) | |
| cov (0.132153) | |
| cly (0.120642) | |
| eru (0.120048) | |
| ldo (0.0970026) |
| Expressed library(ies): 23 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fat (0.737137) | |
| kid (0.518941) | |
| ski (0.440205) | |
| amn (0.417711) | |
| ova (0.387397) | |
| ese (0.379507) | |
| jca (0.34188) | |
| vin (0.332557) | |
| bla (0.248694) | |
| cty (0.20816) | |
| hea (0.204499) | |
| cmu (0.186393) | |
| mcp (0.170648) | |
| eye (0.170503) | |
| tbr (0.154178) | |
| lun (0.150489) | |
| bfe (0.149858) | |
| ste (0.135208) | |
| pla (0.133672) | |
| cov (0.132153) | |
| cly (0.120642) | |
| eru (0.120048) | |
| ldo (0.0970026) |