Non-Coding RNA Search

Ss1.1-rste29_d24.5

Sequence:


               
               GAGGACCCCATGAGCGCTTACTTCTTGCAGTTTGACCACCTGGACTCAGAGTGGCTGGGT
ATGCCGCCTCTGCCATCGCCGCGTTGCCTCTTCGGCCTGGGAGAGGCTCTCAACTCCATT
TACGTGGTCGGCGGCCGAGAGCTCAAGGACGGCGAGCGCAGCCTGGACTCGGTCATGTGC
TACGACAGGCTGTCATTCAAATGGGGCGAATCAGACCCGCTGCCTTATGCCGTGTATGGC
CACGCGGTGCTCTCCTACATGGACCTTGTCTATGTCATTGGTGGCAAAGGCAGCGACAGG
AAGTGCCTGAACAAGATGTGCGTCTATGACCCTAAGAAATTCGAGTGGAGGGAGCTGGCC
CCTATGCAGATGGCCCGCTCACTCTTCGGGGCCACCGTCCATGATGGCCGCATTTTCGTG
GCTGCTGGGGTCACAGACACAGGGCTGACCAGTTCGGCGGAGGTGTACAGCATCACAGAC
AACAAGTGGGCGCCCTTTGAGGCCTTCCCACAGGAGCGCAGCTCACTGAGCCTGGTCAGC
CTGGCGGGTACCCTCTATGCTGTCGGTGGCTTTGCCACGCTGGAGACTGAGTCCGGAGAG
CTGGTTCCCACAGAACTCAATGACATATGGAGATATAATGAGGACGAGAAGAAGTGGGAG
GGCGTCCTGCGGGAGATTGCCTATGCCGCTGGGGCCACCTTCCTACCTGTGCGGCTCAAC
GTGCTGCGCCTGACCAAGCTGTGACCCACCCTGAGGCCTGACTGTGCCCCGCCCCTCCAT
GCTGTGGCCTGTGCAGGCCTGGAGTGTGGGAGAGGCAGAACCTACCTGGATCCCATCCTG
TCATAGTGCCTGAGGGGCTGCTTCAGCCAGGAAAGGAAAATTGCTGCCCAGTCCTAGTTT
TAGGGCAGGAAGGGGACACTTTCAGCCTCTCCAGTGTCTCCATACCCCTCAGTGTTTTTG
GCCCATGAGGCAGAGTCTTGGGGGATGTCCCTGGCCTGGCTGTGTGTGCTGGTAAATTCC
CACAGGATTCAGTCTTCTTGCCTGTCAGATAGGGAGTGTCCCCATTGAGTGCATATCTTG
CAGCCTAGATGAGTCTCCTTCTCCTCCTCGGAAGAATAAAAGGCCTTCCGAGCAAGCAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGGACCCCATGAGCGCTTACTTCTTGCAGTTTGACCACCTGGACTCAGAGTGGCTGGGT
ATGCCGCCTCTGCCATCGCCGCGTTGCCTCTTCGGCCTGGGAGAGGCTCTCAACTCCATT
TACGTGGTCGGCGGCCGAGAGCTCAAGGACGGCGAGCGCAGCCTGGACTCGGTCATGTGC
TACGACAGGCTGTCATTCAAATGGGGCGAATCAGACCCGCTGCCTTATGCCGTGTATGGC
CACGCGGTGCTCTCCTACATGGACCTTGTCTATGTCATTGGTGGCAAAGGCAGCGACAGG
AAGTGCCTGAACAAGATGTGCGTCTATGACCCTAAGAAATTCGAGTGGAGGGAGCTGGCC
CCTATGCAGATGGCCCGCTCACTCTTCGGGGCCACCGTCCATGATGGCCGCATTTTCGTG
GCTGCTGGGGTCACAGACACAGGGCTGACCAGTTCGGCGGAGGTGTACAGCATCACAGAC
AACAAGTGGGCGCCCTTTGAGGCCTTCCCACAGGAGCGCAGCTCACTGAGCCTGGTCAGC
CTGGCGGGTACCCTCTATGCTGTCGGTGGCTTTGCCACGCTGGAGACTGAGTCCGGAGAG
CTGGTTCCCACAGAACTCAATGACATATGGAGATATAATGAGGACGAGAAGAAGTGGGAG
GGCGTCCTGCGGGAGATTGCCTATGCCGCTGGGGCCACCTTCCTACCTGTGCGGCTCAAC
GTGCTGCGCCTGACCAAGCTGTGACCCACCCTGAGGCCTGACTGTGCCCCGCCCCTCCAT
GCTGTGGCCTGTGCAGGCCTGGAGTGTGGGAGAGGCAGAACCTACCTGGATCCCATCCTG
TCATAGTGCCTGAGGGGCTGCTTCAGCCAGGAAAGGAAAATTGCTGCCCAGTCCTAGTTT
TAGGGCAGGAAGGGGACACTTTCAGCCTCTCCAGTGTCTCCATACCCCTCAGTGTTTTTG
GCCCATGAGGCAGAGTCTTGGGGGATGTCCCTGGCCTGGCTGTGTGTGCTGGTAAATTCC
CACAGGATTCAGTCTTCTTGCCTGTCAGATAGGGAGTGTCCCCATTGAGTGCATATCTTG
CAGCCTAGATGAGTCTCCTTCTCCTCCTCGGAAGAATAAAAGGCCTTCCGAGCAAGCAGC

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               298-511, gnl|bosTau2|chr22 (14282351-14282139)
               

               
               298-511, gnl|Hg17|chr3 (42705363-42705571)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               298-511, gnl|bosTau2|chr22 (14282351-14282139)
               

               
               298-511, gnl|Hg17|chr3 (42705363-42705571)

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

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               nms (0.213858)
               

               
               mas (0.210305)
               

               
               ste (0.135208)
               

               
               ldo (0.0970026)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nms (0.213858)
               

               
               mas (0.210305)
               

               
               ste (0.135208)
               

               
               ldo (0.0970026)

	298-511, gnl\|bosTau2\|chr22 (14282351-14282139)
	298-511, gnl\|Hg17\|chr3 (42705363-42705571)