Non-Coding RNA Search

Ss1.1-rste30_h12.5

Sequence:


               
               AGAGTTCGTTATCTAGCCAAGGAAAATATAACCCAGGACCCTGAGACCCACACAGTCTCT
TTCCTACAGCCCAATGGTGCCATCTTTGAACCCTCACTATCAGTTGGAACAGAGAACGAC
ACCTTCACTGTTCTCAATCTGGCTGTGGCAGCTGTACCCCATCTCTATTCAAATACATTT
ATTCAAGGAGTACTCAATACACTTATCAAAAAGTCAAAATCTTCTATGTTTCAAAAGAGA
ACTTTGAAAGAACTATTGTGGGGCTATCCGGATCCATTCTTGAACCTGGTTCCATACCCT
ATTCCTACCACAGTTGGTGTGTTTTATCCTTACAACAATACTTCAGATGGAGTGTATAAA
GTTTTCAATGGGAAGGATGACATAAGTAAAGTTGCCATAATTGACACATATAAAGGCAAA
AAGAATCTCTCCTACTGGCTGAGTTATTGTGACATGATTAATGGTACAGATGCAGCCTCA
TTTCCACCTTTCATTGAGAAGACCCGGGTATTGCAATTCTTTTCCTCTGACATTTGCAGG
TCAATCTATGCTGTGTTTGGAGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAGTTCGTTATCTAGCCAAGGAAAATATAACCCAGGACCCTGAGACCCACACAGTCTCT
TTCCTACAGCCCAATGGTGCCATCTTTGAACCCTCACTATCAGTTGGAACAGAGAACGAC
ACCTTCACTGTTCTCAATCTGGCTGTGGCAGCTGTACCCCATCTCTATTCAAATACATTT
ATTCAAGGAGTACTCAATACACTTATCAAAAAGTCAAAATCTTCTATGTTTCAAAAGAGA
ACTTTGAAAGAACTATTGTGGGGCTATCCGGATCCATTCTTGAACCTGGTTCCATACCCT
ATTCCTACCACAGTTGGTGTGTTTTATCCTTACAACAATACTTCAGATGGAGTGTATAAA
GTTTTCAATGGGAAGGATGACATAAGTAAAGTTGCCATAATTGACACATATAAAGGCAAA
AAGAATCTCTCCTACTGGCTGAGTTATTGTGACATGATTAATGGTACAGATGCAGCCTCA
TTTCCACCTTTCATTGAGAAGACCCGGGTATTGCAATTCTTTTCCTCTGACATTTGCAGG
TCAATCTATGCTGTGTTTGGAGCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61827483|ref|XP_596719.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61827483|ref|XP_596719.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               151-330, gnl|bosTau2|chr4 (14706216-14706395)
               

               
               151-330, gnl|Hg17|chr7 (79936957-79937136)
               

               
               151-330, gnl|Mm7|chr5 (16827811-16827632)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               151-330, gnl|bosTau2|chr4 (14706216-14706395)
               

               
               151-330, gnl|Hg17|chr7 (79936957-79937136)
               

               
               151-330, gnl|Mm7|chr5 (16827811-16827632)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               hea (0.204499)
               

               
               ldo (0.194005)
               

               
               nco (0.161734)
               

               
               fat (0.147427)
               

               
               ste (0.135208)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hea (0.204499)
               

               
               ldo (0.194005)
               

               
               nco (0.161734)
               

               
               fat (0.147427)
               

               
               ste (0.135208)

	151-330, gnl\|bosTau2\|chr4 (14706216-14706395)
	151-330, gnl\|Hg17\|chr7 (79936957-79937136)
	151-330, gnl\|Mm7\|chr5 (16827811-16827632)

	hea (0.204499)
	ldo (0.194005)
	nco (0.161734)
	fat (0.147427)
	ste (0.135208)