Non-Coding RNA Search

Ss1.1-rste32_j18.5

Sequence:


               
               TGCGCGGCAATGGCGGATATGGAGGACCTTTTCGGGAGCGACGTCGACAGTGATGCTGAG
CGTAAAGATTCAGATTCTGGATCAGAGTCGGATTCTGATCAAGAGAATGTTGCTTCTGGC
AGTAATGCTTCTGGAAGTGAAAGTGATCAAGATGAAAGAGATGATTCAGGAAAACCAAGT
AATAAGGAACTGTTTGGTGATGACAGCGAGGATGAGGGAGCTTCTCATCATAGTGGGAGT
GATAATCACTCTGAAAGATCAGACAATAGATCAGAAGTTTCTGAACGATCTGACCATGAA
GACAATGACCCCTCAGATGTAGATCAGCACAGTGGATCAGAAGCCCACAATGACGATGAA
GATGAAGGTCATAGATCAGATGGAGGGAGCCATCACTCAGAAGTGGAAGGTTCTGAAAAA
GCACATTCAGATGATGAAAAATGGGGTGGAGAAGATAAAAGTGACCAGTCAGATGATGAA
AAGATACAGAATTCTGATGATGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCGCGGCAATGGCGGATATGGAGGACCTTTTCGGGAGCGACGTCGACAGTGATGCTGAG
CGTAAAGATTCAGATTCTGGATCAGAGTCGGATTCTGATCAAGAGAATGTTGCTTCTGGC
AGTAATGCTTCTGGAAGTGAAAGTGATCAAGATGAAAGAGATGATTCAGGAAAACCAAGT
AATAAGGAACTGTTTGGTGATGACAGCGAGGATGAGGGAGCTTCTCATCATAGTGGGAGT
GATAATCACTCTGAAAGATCAGACAATAGATCAGAAGTTTCTGAACGATCTGACCATGAA
GACAATGACCCCTCAGATGTAGATCAGCACAGTGGATCAGAAGCCCACAATGACGATGAA
GATGAAGGTCATAGATCAGATGGAGGGAGCCATCACTCAGAAGTGGAAGGTTCTGAAAAA
GCACATTCAGATGATGAAAAATGGGGTGGAGAAGATAAAAGTGACCAGTCAGATGATGAA
AAGATACAGAATTCTGATGATGAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61863082|ref|XP_584149.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61863082|ref|XP_584149.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               57-369, - strand, RNAz p=0.946812
               

               
               387-504, + strand, RNAz p=0.922172

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               57-369, - strand, RNAz p=0.946812
               

               
               387-504, + strand, RNAz p=0.922172

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               57-504, gnl|bosTau2|chr9 (15981046-15980593)
               

               
               57-504, gnl|Hg17|chr15 (50046004-50045557)
               

               
               57-504, gnl|Mm7|chr9 (75482365-75482812)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               57-504, gnl|bosTau2|chr9 (15981046-15980593)
               

               
               57-504, gnl|Hg17|chr15 (50046004-50045557)
               

               
               57-504, gnl|Mm7|chr9 (75482365-75482812)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               tbr (0.154178)
               

               
               spl (0.143184)
               

               
               ste (0.135208)
               

               
               jej (0.0989218)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tbr (0.154178)
               

               
               spl (0.143184)
               

               
               ste (0.135208)
               

               
               jej (0.0989218)

	57-369, - strand, RNAz p=0.946812
	387-504, + strand, RNAz p=0.922172

	57-504, gnl\|bosTau2\|chr9 (15981046-15980593)
	57-504, gnl\|Hg17\|chr15 (50046004-50045557)
	57-504, gnl\|Mm7\|chr9 (75482365-75482812)