Non-Coding RNA Search

Ss1.1-rste32_j19.5

Sequence:


               
               CACTCCTTTCTGGGCTCTTTGTTCTGTGGCTTTGCAGTCAATAACTAGGCCATGACTGGT
TTAGAAATGATTTGGGGAAGAGAGATTGGCAAGGAAGAACAGAAAGAATTACTGAAGGAA
ACAGTGGAGAGACTAAGAGACACATGAAACACTCACATTTATCCAGAGTGAAATAAGGTT
ACAGTCTGAGGTTGAAATGATCACAGAATAAGGGTTCAAGGCAAGGTTTCTGCATTCTGG
ATGTCTGCAGGGGCTCCTCATCAATGTTCACAGTCTCGTTTATAGCAAGCAAATTGCTCC
AGTCCATCTACTCTTGAGATCAGCCCTATAATCTTATCGGTTGTGGGGTCTTAATGATCA
GTAGAACACTTAAGGGCTGAGATCTTTAATAGGGAAGAACTGAAAGAGGAAGACATAATC
ATTGCCCATCAGAAAGTCAAAATCGGGAGTTCTCGTCGTGGCTCAGTGGTTAACGAATCT
AAGAACCATGAGGTTTCGGGTTCAATTCCTGGCCCAGCTCAGTGGGTTAGGGATCTGGCG
TTGCCGTGAGCTGTGGTGTAGGTCACAGATGTGGCTCAGATCCTGAGTTGCTGTGGCTCT
GGCGTAGGCCGGTGACTACAGCTCCAATTAGACCCCTAGCCTGGGAACCTCCATATGCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACTCCTTTCTGGGCTCTTTGTTCTGTGGCTTTGCAGTCAATAACTAGGCCATGACTGGT
TTAGAAATGATTTGGGGAAGAGAGATTGGCAAGGAAGAACAGAAAGAATTACTGAAGGAA
ACAGTGGAGAGACTAAGAGACACATGAAACACTCACATTTATCCAGAGTGAAATAAGGTT
ACAGTCTGAGGTTGAAATGATCACAGAATAAGGGTTCAAGGCAAGGTTTCTGCATTCTGG
ATGTCTGCAGGGGCTCCTCATCAATGTTCACAGTCTCGTTTATAGCAAGCAAATTGCTCC
AGTCCATCTACTCTTGAGATCAGCCCTATAATCTTATCGGTTGTGGGGTCTTAATGATCA
GTAGAACACTTAAGGGCTGAGATCTTTAATAGGGAAGAACTGAAAGAGGAAGACATAATC
ATTGCCCATCAGAAAGTCAAAATCGGGAGTTCTCGTCGTGGCTCAGTGGTTAACGAATCT
AAGAACCATGAGGTTTCGGGTTCAATTCCTGGCCCAGCTCAGTGGGTTAGGGATCTGGCG
TTGCCGTGAGCTGTGGTGTAGGTCACAGATGTGGCTCAGATCCTGAGTTGCTGTGGCTCT
GGCGTAGGCCGGTGACTACAGCTCCAATTAGACCCCTAGCCTGGGAACCTCCATATGCTG

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-445, gnl|bosTau2|chr3 (15318855-15319309)
               

               
               1-445, gnl|Hg17|chr1 (142905937-142906376)
               

               
               1-445, gnl|Mm7|chr3 (96402594-96402993)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-445, gnl|bosTau2|chr3 (15318855-15319309)
               

               
               1-445, gnl|Hg17|chr1 (142905937-142906376)
               

               
               1-445, gnl|Mm7|chr3 (96402594-96402993)

Expressed library(ies): 7 entry(ies)

More info

Expressed library(ies): 7 entry(ies)

Help | Less info


               
               ste (0.540833)
               

               
               ssp (0.406559)
               

               
               sme (0.305437)
               

               
               fli (0.202881)
               

               
               tbr (0.154178)
               

               
               cli (0.152812)
               

               
               lun (0.150489)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ste (0.540833)
               

               
               ssp (0.406559)
               

               
               sme (0.305437)
               

               
               fli (0.202881)
               

               
               tbr (0.154178)
               

               
               cli (0.152812)
               

               
               lun (0.150489)

	1-445, gnl\|bosTau2\|chr3 (15318855-15319309)
	1-445, gnl\|Hg17\|chr1 (142905937-142906376)
	1-445, gnl\|Mm7\|chr3 (96402594-96402993)

	ste (0.540833)
	ssp (0.406559)
	sme (0.305437)
	fli (0.202881)
	tbr (0.154178)
	cli (0.152812)
	lun (0.150489)