Non-Coding RNA Search

Ss1.1-rste32_p10.5

Sequence:


               
               CAGCGCTACAGCTGCTGGCCTAAGCCAGAGCCACAGCAATGCCAGATGTGAGCCACATCT
CTGACCTACACCACAGCTCACGGCAATGCTGGCTCCCTGGCCCACTGAGCCAGGCCAGGG
ACCAAACCTCATGGTTCCTAGTCAGATTCGTTTGCACTGCGCCATGACGGGAATTCCCAT
CTGTCCATTCTTTAAACTTTCACTTATTCAAAGTATGTTCACTGCAGCATTATAATTGCA
AAACCATGAAAACAAACTAAATGTCCACAAATGTATTTTAGAATCCAACAAAGCATTTTA
AAAGGATAATGAAAACTGACAGTGACATGGAAAGAGCTTCAACGTGTGGGAACTGGAGAG
TGAAATAAACTTTTCATTTTAAAAAACTTTCTTACCAAAAAGAATAATGTGCTATATTGT
TTGTATATTTTTAAAAATATTAAGGTAACCTAGCCCAGTGACTTCTTGTACAGAAGCCAT
CAAGTAGCTCAGAGGTATAATGGATAAAAATAGGTCTGATGCAAACATACTGTGTTGTTT
CTCTGCATACAGACAAAATCTGGGTTACATTATTAATAAAATTTAAAAATTACTATTAAA
TAAATGGTGTAATATCTAGAGCAGAACATAAAAAATTCCTTCTAAATTTATCATTGTCAC
TTGATAAAAAATTACATCTAGTTTTTCTATGCTGAACTCTGTAAAATATTGATTCTGTAA
AATACTGTTTGTTGTTCACTGTGTTAAGAGTTTTAAATTTGTTTTAATTTGAAGAGGATA
AAAAGTTCTGTAGGAAAACTAATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGCGCTACAGCTGCTGGCCTAAGCCAGAGCCACAGCAATGCCAGATGTGAGCCACATCT
CTGACCTACACCACAGCTCACGGCAATGCTGGCTCCCTGGCCCACTGAGCCAGGCCAGGG
ACCAAACCTCATGGTTCCTAGTCAGATTCGTTTGCACTGCGCCATGACGGGAATTCCCAT
CTGTCCATTCTTTAAACTTTCACTTATTCAAAGTATGTTCACTGCAGCATTATAATTGCA
AAACCATGAAAACAAACTAAATGTCCACAAATGTATTTTAGAATCCAACAAAGCATTTTA
AAAGGATAATGAAAACTGACAGTGACATGGAAAGAGCTTCAACGTGTGGGAACTGGAGAG
TGAAATAAACTTTTCATTTTAAAAAACTTTCTTACCAAAAAGAATAATGTGCTATATTGT
TTGTATATTTTTAAAAATATTAAGGTAACCTAGCCCAGTGACTTCTTGTACAGAAGCCAT
CAAGTAGCTCAGAGGTATAATGGATAAAAATAGGTCTGATGCAAACATACTGTGTTGTTT
CTCTGCATACAGACAAAATCTGGGTTACATTATTAATAAAATTTAAAAATTACTATTAAA
TAAATGGTGTAATATCTAGAGCAGAACATAAAAAATTCCTTCTAAATTTATCATTGTCAC
TTGATAAAAAATTACATCTAGTTTTTCTATGCTGAACTCTGTAAAATATTGATTCTGTAA
AATACTGTTTGTTGTTCACTGTGTTAAGAGTTTTAAATTTGTTTTAATTTGAAGAGGATA
AAAAGTTCTGTAGGAAAACTAATG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               381-481, - strand, RNAz p=0.897199

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               381-481, - strand, RNAz p=0.897199

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               206-341, gnl|bosTau2|chr27 (12274645-12274506)
               

               
               206-341, gnl|Hg17|chr8 (17948738-17948888)
               


               
               381-533, gnl|bosTau2|chr27 (12274371-12274225)
               

               
               381-533, gnl|Hg17|chr8 (17949621-17949790)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               206-341, gnl|bosTau2|chr27 (12274645-12274506)
               

               
               206-341, gnl|Hg17|chr8 (17948738-17948888)
               


               
               381-533, gnl|bosTau2|chr27 (12274371-12274225)
               

               
               381-533, gnl|Hg17|chr8 (17949621-17949790)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               pro (0.512033)
               

               
               elu (0.385356)
               

               
               ste (0.135208)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (0.512033)
               

               
               elu (0.385356)
               

               
               ste (0.135208)

	206-341, gnl\|bosTau2\|chr27 (12274645-12274506)
	206-341, gnl\|Hg17\|chr8 (17948738-17948888)

	381-533, gnl\|bosTau2\|chr27 (12274371-12274225)
	381-533, gnl\|Hg17\|chr8 (17949621-17949790)