Non-Coding RNA Search

Ss1.1-rste33_n14.5

Sequence:


               
               CAGATCTGCTACTTGAATTACCCTAACTCGTATTTCACTGGCCTTGAATGTGGACATAAG
TTTTGTATGCAGTGCTGGAGTGAATATTTAACTACCAAAATAATGGAAGAAGGCATGGGA
CAGACTATTTCGTGTCCTGCTCATGGTTGTGATATTTTAGTGGATGACAACACAGTTATG
CGCCTGATCACAGATTCAAAAGTTAAATTAAAGTATCAGCATTTAATAACAAATAGTTTT
GTAGAGTGTAATCGACTGTTAAAGTGGTGTCCTGCCCCAGATTGCCACCATGTTGTGAAA
GTTCAATATCCTGACGCTAAACCTGTTCGCTGCAAATGTGGGCGCCAGTTTTGCTTTAAC
TGTGGAGAAAATTGGCATGACCCTCATGTAGCTTTTCTAGTTATTTTCAGTAGTAAATAG
TAGAAAAAATTCTTTACTTGAGGTAGGTGGGTGATGTTGATTTTAAATAGTATTATATAT
TATAATATATAATAATAGTATATATTATTCATATAATATATATATGAATGACTGGGTCAC
TCTGGTGTACAGCAGAAATTGGCACAACAGTGTAAATCAACTATACTTTAAAAAATTTTT
TTTTAATTAAAAAAAATTGATTTAAAAGGTACATTTTCCTCTTTTGTTTTGGCCATACTC
ACAGCATGTTCAAGTCCCCGAGCCAGGGATTGAACTGCACCATAGTTGGGGCCTCTGCCA
CAGCTGCTGCAGTACTATATCCTTAACCCGCTGCACCACGAAGGAATTTCCTACAAGTCA
CATATTGAAATAATTTTTCCTCTTTCTTTGTTGCTCTAATTTTTGGAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGATCTGCTACTTGAATTACCCTAACTCGTATTTCACTGGCCTTGAATGTGGACATAAG
TTTTGTATGCAGTGCTGGAGTGAATATTTAACTACCAAAATAATGGAAGAAGGCATGGGA
CAGACTATTTCGTGTCCTGCTCATGGTTGTGATATTTTAGTGGATGACAACACAGTTATG
CGCCTGATCACAGATTCAAAAGTTAAATTAAAGTATCAGCATTTAATAACAAATAGTTTT
GTAGAGTGTAATCGACTGTTAAAGTGGTGTCCTGCCCCAGATTGCCACCATGTTGTGAAA
GTTCAATATCCTGACGCTAAACCTGTTCGCTGCAAATGTGGGCGCCAGTTTTGCTTTAAC
TGTGGAGAAAATTGGCATGACCCTCATGTAGCTTTTCTAGTTATTTTCAGTAGTAAATAG
TAGAAAAAATTCTTTACTTGAGGTAGGTGGGTGATGTTGATTTTAAATAGTATTATATAT
TATAATATATAATAATAGTATATATTATTCATATAATATATATATGAATGACTGGGTCAC
TCTGGTGTACAGCAGAAATTGGCACAACAGTGTAAATCAACTATACTTTAAAAAATTTTT
TTTTAATTAAAAAAAATTGATTTAAAAGGTACATTTTCCTCTTTTGTTTTGGCCATACTC
ACAGCATGTTCAAGTCCCCGAGCCAGGGATTGAACTGCACCATAGTTGGGGCCTCTGCCA
CAGCTGCTGCAGTACTATATCCTTAACCCGCTGCACCACGAAGGAATTTCCTACAAGTCA
CATATTGAAATAATTTTTCCTCTTTCTTTGTTGCTCTAATTTTTGGAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|13991712|gb|AAK51471.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|13991712|gb|AAK51471.1|

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               245-492, gnl|bosTau2|chr10 (10917368-10917615)
               

               
               245-492, gnl|Hg17|chr15 (70642787-70643045)
               

               
               245-492, gnl|Mm7|chr9 (59439460-59439207)
               


               
               497-614, gnl|bosTau2|chr19 (19549468-19549349)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               245-492, gnl|bosTau2|chr10 (10917368-10917615)
               

               
               245-492, gnl|Hg17|chr15 (70642787-70643045)
               

               
               245-492, gnl|Mm7|chr9 (59439460-59439207)
               


               
               497-614, gnl|bosTau2|chr19 (19549468-19549349)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ste (0.135208)
               

               
               bla (0.124347)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ste (0.135208)
               

               
               bla (0.124347)

	245-492, gnl\|bosTau2\|chr10 (10917368-10917615)
	245-492, gnl\|Hg17\|chr15 (70642787-70643045)
	245-492, gnl\|Mm7\|chr9 (59439460-59439207)

	497-614, gnl\|bosTau2\|chr19 (19549468-19549349)