Non-Coding RNA Search

Ss1.1-rste33_o19.5

Sequence:


               
               TTTTTTTTTTTTTTTTTTAAATCTATTTTTGATGAAGACCTTTAAACATGCTTCATATGT
TTTAACATTTTTCAAATTAGTCTTTTAGTCAATGTAGGAAATGGCTTAAGTTTGGGGTCC
CCCTCTCTCTACCCCTGTAAGCCATTGCAAACTTGACATTTAGTTGGATGCCTGACTTGT
TTTTAGTTCTATGAACCTACACTGTATGGAGAAAATCTATTGCAAGTGGTCTTTAAAAAG
CAAAACCTGAGGCAGCATGACCCAGGTCCAGCCATGAAGTTGAAAAAGATGCTCTTGAAT
ATAGTAAACTTGAAGACCTCCAACTAAAAATCCTTACACTGCACTTATTCCTTCAAATAA
GTTTTGTCCGTTCAACTTATGGATTTAACATGGCAGTGCACCATTGGAACAGAATGGGAA
TCCATAAGCCATGCAACTTAACCATTTAAGCCATTCCAGTCCATCCCAAGCCAATGAAAT
CTTCCACCACTTAAGAGAAATAGTAGAACATGAAATAACGTTAAGCTGCAAGTCTGAACT
TGCCTTGTCTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTTTTTTAAATCTATTTTTGATGAAGACCTTTAAACATGCTTCATATGT
TTTAACATTTTTCAAATTAGTCTTTTAGTCAATGTAGGAAATGGCTTAAGTTTGGGGTCC
CCCTCTCTCTACCCCTGTAAGCCATTGCAAACTTGACATTTAGTTGGATGCCTGACTTGT
TTTTAGTTCTATGAACCTACACTGTATGGAGAAAATCTATTGCAAGTGGTCTTTAAAAAG
CAAAACCTGAGGCAGCATGACCCAGGTCCAGCCATGAAGTTGAAAAAGATGCTCTTGAAT
ATAGTAAACTTGAAGACCTCCAACTAAAAATCCTTACACTGCACTTATTCCTTCAAATAA
GTTTTGTCCGTTCAACTTATGGATTTAACATGGCAGTGCACCATTGGAACAGAATGGGAA
TCCATAAGCCATGCAACTTAACCATTTAAGCCATTCCAGTCCATCCCAAGCCAATGAAAT
CTTCCACCACTTAAGAGAAATAGTAGAACATGAAATAACGTTAAGCTGCAAGTCTGAACT
TGCCTTGTCTTT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               51-206, - strand, RNAz p=0.930145
               

               
               435-552, - strand, RNAz p=0.590088

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               51-206, - strand, RNAz p=0.930145
               

               
               435-552, - strand, RNAz p=0.590088

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               13-552, gnl|bosTau2|chrX (4532684-4532146)
               

               
               13-552, gnl|canFam2|chrX (110244626-110245182)
               

               
               13-552, gnl|echTel1|scaffold_312381 (6432-5878)
               

               
               13-552, gnl|galGal2|chr4 (4198947-4199501)
               

               
               13-552, gnl|hg17|chrX (135680024-135680587)
               

               
               13-552, gnl|Hg17|chrX (135680650-135680109)
               

               
               13-552, gnl|mm7|chrX (52865929-52866512)
               

               
               13-552, gnl|Mm7|chrX (52866571-52866024)
               

               
               13-552, gnl|monDom2|scaffold_72 (7848060-7847514)
               

               
               13-552, gnl|oryCun1|scaffold_173821 (12573-13136)
               

               
               13-552, gnl|panTro1|chrX (140337620-140338183)
               

               
               13-552, gnl|rheMac2|chrX (134948940-134949502)
               

               
               13-552, gnl|rn3|chrX (142185129-142185697)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               13-552, gnl|bosTau2|chrX (4532684-4532146)
               

               
               13-552, gnl|canFam2|chrX (110244626-110245182)
               

               
               13-552, gnl|echTel1|scaffold_312381 (6432-5878)
               

               
               13-552, gnl|galGal2|chr4 (4198947-4199501)
               

               
               13-552, gnl|hg17|chrX (135680024-135680587)
               

               
               13-552, gnl|Hg17|chrX (135680650-135680109)
               

               
               13-552, gnl|mm7|chrX (52865929-52866512)
               

               
               13-552, gnl|Mm7|chrX (52866571-52866024)
               

               
               13-552, gnl|monDom2|scaffold_72 (7848060-7847514)
               

               
               13-552, gnl|oryCun1|scaffold_173821 (12573-13136)
               

               
               13-552, gnl|panTro1|chrX (140337620-140338183)
               

               
               13-552, gnl|rheMac2|chrX (134948940-134949502)
               

               
               13-552, gnl|rn3|chrX (142185129-142185697)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               ecc (0.23007)
               

               
               spl (0.143184)
               

               
               ste (0.135208)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ecc (0.23007)
               

               
               spl (0.143184)
               

               
               ste (0.135208)

	51-206, - strand, RNAz p=0.930145
	435-552, - strand, RNAz p=0.590088

	13-552, gnl\|bosTau2\|chrX (4532684-4532146)
	13-552, gnl\|canFam2\|chrX (110244626-110245182)
	13-552, gnl\|echTel1\|scaffold_312381 (6432-5878)
	13-552, gnl\|galGal2\|chr4 (4198947-4199501)
	13-552, gnl\|hg17\|chrX (135680024-135680587)
	13-552, gnl\|Hg17\|chrX (135680650-135680109)
	13-552, gnl\|mm7\|chrX (52865929-52866512)
	13-552, gnl\|Mm7\|chrX (52866571-52866024)
	13-552, gnl\|monDom2\|scaffold_72 (7848060-7847514)
	13-552, gnl\|oryCun1\|scaffold_173821 (12573-13136)
	13-552, gnl\|panTro1\|chrX (140337620-140338183)
	13-552, gnl\|rheMac2\|chrX (134948940-134949502)
	13-552, gnl\|rn3\|chrX (142185129-142185697)