Ss1.1-rste34_d1.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGGATAAGAACCTTAGAGCTACCATCCTCACAGCGCTTTTCTGTGAGGCCAGAAGGAAGT TAGGTTTGTTAGGCAGTCACAGAGTGGCAGATTAAAAACTAGAATCTAGCTTTTTTCTCT TTTTGGTTAAGGTGCCCTTTTTGTTAACACCAGACTGCTTCATTAGGCATAGTAAAATTT CTTTCTATATGAAATTGTGTTGCTAGTCGTGTTTGTATGCGAGACAAAAGTTCTTTTCTT ATGCTTATCCCCCTGTTCCCTACCAATCTTGGCACTTTTCAGGGAGTATCAGTCCCGCGC GGACTCCGAATCCTGACCTCGGCGGGGGCGAGCGGCCCCTCCCCTCCGCTCTGAGGATAG AAGATGAGCTTCCTCTTTAGTAGCCGTTCTTCTAAAACATTCAAACCAAAGAAGAATATC CCTGAAGGGTCTCATCAGTATGAACTCTTAAAACATGCAGAAGCAACTCTAGGCAGTGGG AATCTGAGACAAGCTGTTATGTTGCCAGAAGGAGAGGACCTGAATGAATGGATTGCTGTT AACACTGTGGATTTCTTCAACCAGATCAACATGTTATATGGAACTATCACAGAATTCTGC ACTGAAGCAAGTTGTCCAGTCATGTCTGCAGGTCCAAGATATGAATACCATGGGGCAGAT GGTACTAACATTAAAAAACCAATCAAATGTTCTGCACCAAAATACATTGACTATTTGATG ACTTGGGTTCAGGATCAACTTGATGATGAAACTCTTTTTCCTTCTAAGATTGGTGTCCCA TTTCCCAAAAACTTTATGTCTGTGGCAAAGACCATTCTAAAGCGTCTCTTCAGGGTTTAT GCCCATATTTACCACCAGCACTTTGATTCTGTGATGCAGCTGCAGGAAGAGGCCCACCTC AATACCTCCTTTAAGCACTTTATTTTCTTGGTTCAGGAATTTAATCTGATCGATAGGCGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGGATAAGAACCTTAGAGCTACCATCCTCACAGCGCTTTTCTGTGAGGCCAGAAGGAAGT TAGGTTTGTTAGGCAGTCACAGAGTGGCAGATTAAAAACTAGAATCTAGCTTTTTTCTCT TTTTGGTTAAGGTGCCCTTTTTGTTAACACCAGACTGCTTCATTAGGCATAGTAAAATTT CTTTCTATATGAAATTGTGTTGCTAGTCGTGTTTGTATGCGAGACAAAAGTTCTTTTCTT ATGCTTATCCCCCTGTTCCCTACCAATCTTGGCACTTTTCAGGGAGTATCAGTCCCGCGC GGACTCCGAATCCTGACCTCGGCGGGGGCGAGCGGCCCCTCCCCTCCGCTCTGAGGATAG AAGATGAGCTTCCTCTTTAGTAGCCGTTCTTCTAAAACATTCAAACCAAAGAAGAATATC CCTGAAGGGTCTCATCAGTATGAACTCTTAAAACATGCAGAAGCAACTCTAGGCAGTGGG AATCTGAGACAAGCTGTTATGTTGCCAGAAGGAGAGGACCTGAATGAATGGATTGCTGTT AACACTGTGGATTTCTTCAACCAGATCAACATGTTATATGGAACTATCACAGAATTCTGC ACTGAAGCAAGTTGTCCAGTCATGTCTGCAGGTCCAAGATATGAATACCATGGGGCAGAT GGTACTAACATTAAAAAACCAATCAAATGTTCTGCACCAAAATACATTGACTATTTGATG ACTTGGGTTCAGGATCAACTTGATGATGAAACTCTTTTTCCTTCTAAGATTGGTGTCCCA TTTCCCAAAAACTTTATGTCTGTGGCAAAGACCATTCTAAAGCGTCTCTTCAGGGTTTAT GCCCATATTTACCACCAGCACTTTGATTCTGTGATGCAGCTGCAGGAAGAGGCCCACCTC AATACCTCCTTTAAGCACTTTATTTTCTTGGTTCAGGAATTTAATCTGATCGATAGGCGT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 811-930, + strand, RNAz p=0.643328 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 811-930, + strand, RNAz p=0.643328 |
| Aligned organism(s): 39 entry(ies) | More info |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
| 5-236, gnl|bosTau2|chr11 (9650983-9651227) | |
| 378-544, gnl|bosTau2|chr11 (9651379-9651545) | |
| 378-544, gnl|Hg17|chr2 (74311534-74311368) | |
| 378-544, gnl|Mm7|chr6 (83355238-83355404) | |
| 545-648, gnl|bosTau2|chr11 (9661564-9661667) | |
| 545-648, gnl|Hg17|chr2 (74305889-74305786) | |
| 545-648, gnl|Mm7|chr6 (83357825-83357928) | |
| 772-937, gnl|bosTau2|chr11 (9667445-9667610) | |
| 772-937, gnl|canFam2|chr17 (52000767-52000570) | |
| 772-937, gnl|canFam2|chr22 (41015877-41015971) | |
| 772-937, gnl|danRer3|chr21 (2327942-2327807) | |
| 772-937, gnl|danRer3|chrUn (71250735-71250936) | |
| 772-937, gnl|dasNov1|scaffold_42623 (2829-2963) | |
| 772-937, gnl|dasNov1|scaffold_72595 (3826-3665) | |
| 772-937, gnl|echTel1|scaffold_317534 (7750-7559) | |
| 772-937, gnl|echTel1|scaffold_324320 (49572-49446) | |
| 772-937, gnl|fr1|chrUn (72531735-72531556) | |
| 772-937, gnl|fr1|chrUn (72531557-72531703) | |
| 772-937, gnl|galGal2|chr4 (50661029-50660836) | |
| 772-937, gnl|hg17|chr13 (85441441-85441573) | |
| 772-937, gnl|hg17|chr2 (74297869-74298066) | |
| 772-937, gnl|Hg17|chr2 (74298037-74297872) | |
| 772-937, gnl|loxAfr1|scaffold_47247 (12393-12258) | |
| 772-937, gnl|loxAfr1|scaffold_8723 (31886-32077) | |
| 772-937, gnl|mm7|chr6 (83363821-83363630) | |
| 772-937, gnl|mm7|chr6 (83363654-83363789) | |
| 772-937, gnl|Mm7|chr6 (83363651-83363816) | |
| 772-937, gnl|monDom2|scaffold_104 (3926785-3926598) | |
| 772-937, gnl|oryCun1|scaffold_172554 (5309-5112) | |
| 772-937, gnl|oryCun1|scaffold_172554 (5142-5277) | |
| 772-937, gnl|panTro1|chr12_random (27208654-27208851) | |
| 772-937, gnl|panTro1|chr14 (68174814-68174946) | |
| 772-937, gnl|rheMac2|chr13 (74381929-74382126) | |
| 772-937, gnl|rheMac2|chr17 (66456021-66456153) | |
| 772-937, gnl|rn3|chr1 (62110234-62110099) | |
| 772-937, gnl|rn3|chr4 (117795117-117794926) | |
| 772-937, gnl|tetNig1|chr12 (6926784-6926957) | |
| 772-937, gnl|tetNig1|chr12 (6926949-6926816) | |
| 772-937, gnl|xenTro1|scaffold_5 (3716287-3716457) |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 5-236, gnl|bosTau2|chr11 (9650983-9651227) | |
| 378-544, gnl|bosTau2|chr11 (9651379-9651545) | |
| 378-544, gnl|Hg17|chr2 (74311534-74311368) | |
| 378-544, gnl|Mm7|chr6 (83355238-83355404) | |
| 545-648, gnl|bosTau2|chr11 (9661564-9661667) | |
| 545-648, gnl|Hg17|chr2 (74305889-74305786) | |
| 545-648, gnl|Mm7|chr6 (83357825-83357928) | |
| 772-937, gnl|bosTau2|chr11 (9667445-9667610) | |
| 772-937, gnl|canFam2|chr17 (52000767-52000570) | |
| 772-937, gnl|canFam2|chr22 (41015877-41015971) | |
| 772-937, gnl|danRer3|chr21 (2327942-2327807) | |
| 772-937, gnl|danRer3|chrUn (71250735-71250936) | |
| 772-937, gnl|dasNov1|scaffold_42623 (2829-2963) | |
| 772-937, gnl|dasNov1|scaffold_72595 (3826-3665) | |
| 772-937, gnl|echTel1|scaffold_317534 (7750-7559) | |
| 772-937, gnl|echTel1|scaffold_324320 (49572-49446) | |
| 772-937, gnl|fr1|chrUn (72531735-72531556) | |
| 772-937, gnl|fr1|chrUn (72531557-72531703) | |
| 772-937, gnl|galGal2|chr4 (50661029-50660836) | |
| 772-937, gnl|hg17|chr13 (85441441-85441573) | |
| 772-937, gnl|hg17|chr2 (74297869-74298066) | |
| 772-937, gnl|Hg17|chr2 (74298037-74297872) | |
| 772-937, gnl|loxAfr1|scaffold_47247 (12393-12258) | |
| 772-937, gnl|loxAfr1|scaffold_8723 (31886-32077) | |
| 772-937, gnl|mm7|chr6 (83363821-83363630) | |
| 772-937, gnl|mm7|chr6 (83363654-83363789) | |
| 772-937, gnl|Mm7|chr6 (83363651-83363816) | |
| 772-937, gnl|monDom2|scaffold_104 (3926785-3926598) | |
| 772-937, gnl|oryCun1|scaffold_172554 (5309-5112) | |
| 772-937, gnl|oryCun1|scaffold_172554 (5142-5277) | |
| 772-937, gnl|panTro1|chr12_random (27208654-27208851) | |
| 772-937, gnl|panTro1|chr14 (68174814-68174946) | |
| 772-937, gnl|rheMac2|chr13 (74381929-74382126) | |
| 772-937, gnl|rheMac2|chr17 (66456021-66456153) | |
| 772-937, gnl|rn3|chr1 (62110234-62110099) | |
| 772-937, gnl|rn3|chr4 (117795117-117794926) | |
| 772-937, gnl|tetNig1|chr12 (6926784-6926957) | |
| 772-937, gnl|tetNig1|chr12 (6926949-6926816) | |
| 772-937, gnl|xenTro1|scaffold_5 (3716287-3716457) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ste (0.135208) | |
| cbl (0.114797) | |
| jca (0.11396) |