Non-Coding RNA Search

Ss1.1-rste34_n21.5

Sequence:


               
               GGAGGAGGAGTATGAGCCTCAGCTACTGCGGCTCCTGGAGAGGAAAGAAGCTGCGGCCAA
AGCCCTGCAGAAAACCCAGGCCGAGATCCAGGAGATGAAGGAGGCTCTGAGACCACTGCA
GGCAGAGGCCCGGCAGCTCCATCTGCAAAACAGGAACCTGGAGGACCAGATCACCCTTGT
GAGACAAAAACGAGACGAGGAGGTGCAGCAGTACAGGGAACAGCTGGAGGAAATGGAAGA
ACGGCAGAGGCAGCTAAAAAGTGGCGTGCAACTCCAGCAACAGAAGAACAAAGAGATGGA
GCAGCTAAGGATCAGCCTTGCTGAAGAGCTCTCAACTTATAAGGGCTGTTTAGAAATGTA
CGGTCGAATCTGTAACCAAGAAACAACCAAAAAAAATGGAATTGAGACACAGTCTCAAGG
TGATCCTTGGGCTGTTTAGAAATGTACGGTCGAATCTGTAACCAAGAAACAACCAAAAAA
AACTTAGCAAAGGATCACTAAGTACCTTTTGGACAATCTTTTTTTCCAAACAGAAGGGAG
TGCCAGGGACTTGGCAAGCACTTCACCCTGGGAAAGTTACAAACACTGGCTGACCTGTTT
AAAAAAGATTCTGGAGGCAGAATACTATCAGTCAACTCTTAGCTGGATTCTATTTCAATG
GCTGCTGGTACTGATCTCAATGCACTGAGGAATGGCAAAGTGAGTCTCCCATCACCCAGC
AGCAACCTTCCATATGTACAATAAGTAGAGGATGAATGTACAGACATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAGGAGGAGTATGAGCCTCAGCTACTGCGGCTCCTGGAGAGGAAAGAAGCTGCGGCCAA
AGCCCTGCAGAAAACCCAGGCCGAGATCCAGGAGATGAAGGAGGCTCTGAGACCACTGCA
GGCAGAGGCCCGGCAGCTCCATCTGCAAAACAGGAACCTGGAGGACCAGATCACCCTTGT
GAGACAAAAACGAGACGAGGAGGTGCAGCAGTACAGGGAACAGCTGGAGGAAATGGAAGA
ACGGCAGAGGCAGCTAAAAAGTGGCGTGCAACTCCAGCAACAGAAGAACAAAGAGATGGA
GCAGCTAAGGATCAGCCTTGCTGAAGAGCTCTCAACTTATAAGGGCTGTTTAGAAATGTA
CGGTCGAATCTGTAACCAAGAAACAACCAAAAAAAATGGAATTGAGACACAGTCTCAAGG
TGATCCTTGGGCTGTTTAGAAATGTACGGTCGAATCTGTAACCAAGAAACAACCAAAAAA
AACTTAGCAAAGGATCACTAAGTACCTTTTGGACAATCTTTTTTTCCAAACAGAAGGGAG
TGCCAGGGACTTGGCAAGCACTTCACCCTGGGAAAGTTACAAACACTGGCTGACCTGTTT
AAAAAAGATTCTGGAGGCAGAATACTATCAGTCAACTCTTAGCTGGATTCTATTTCAATG
GCTGCTGGTACTGATCTCAATGCACTGAGGAATGGCAAAGTGAGTCTCCCATCACCCAGC
AGCAACCTTCCATATGTACAATAAGTAGAGGATGAATGTACAGACATA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9H7C4_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9H7C4_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-119, - strand, RNAz p=0.930427

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-119, - strand, RNAz p=0.930427

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               1-218, gnl|bosTau2|chr2 (73980331-73980114)
               

               
               1-218, gnl|Hg17|chr1 (32829775-32829558)
               

               
               1-218, gnl|Mm7|chr4 (128738807-128739024)
               


               
               429-766, gnl|bosTau2|chr2 (73972050-73971703)
               

               
               429-766, gnl|canFam2|chr2 (71530295-71529969)
               

               
               429-766, gnl|dasNov1|scaffold_84787 (282-604)
               

               
               429-766, gnl|echTel1|scaffold_71395 (7499-7842)
               

               
               429-766, gnl|hg17|chr1 (32816112-32816435)
               

               
               429-766, gnl|Hg17|chr1 (32816554-32816217)
               

               
               429-766, gnl|loxAfr1|scaffold_30578 (24906-25238)
               

               
               429-766, gnl|mm7|chr4 (128753088-128752796)
               

               
               429-766, gnl|Mm7|chr4 (128752689-128752981)
               

               
               429-766, gnl|monDom2|scaffold_43 (7058390-7058077)
               

               
               429-766, gnl|oryCun1|scaffold_209669 (43785-44108)
               

               
               429-766, gnl|panTro1|chr1 (33559753-33560076)
               

               
               429-766, gnl|rheMac2|chr1 (35455960-35456285)
               

               
               429-766, gnl|rn3|chr5 (148481213-148480934)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-218, gnl|bosTau2|chr2 (73980331-73980114)
               

               
               1-218, gnl|Hg17|chr1 (32829775-32829558)
               

               
               1-218, gnl|Mm7|chr4 (128738807-128739024)
               


               
               429-766, gnl|bosTau2|chr2 (73972050-73971703)
               

               
               429-766, gnl|canFam2|chr2 (71530295-71529969)
               

               
               429-766, gnl|dasNov1|scaffold_84787 (282-604)
               

               
               429-766, gnl|echTel1|scaffold_71395 (7499-7842)
               

               
               429-766, gnl|hg17|chr1 (32816112-32816435)
               

               
               429-766, gnl|Hg17|chr1 (32816554-32816217)
               

               
               429-766, gnl|loxAfr1|scaffold_30578 (24906-25238)
               

               
               429-766, gnl|mm7|chr4 (128753088-128752796)
               

               
               429-766, gnl|Mm7|chr4 (128752689-128752981)
               

               
               429-766, gnl|monDom2|scaffold_43 (7058390-7058077)
               

               
               429-766, gnl|oryCun1|scaffold_209669 (43785-44108)
               

               
               429-766, gnl|panTro1|chr1 (33559753-33560076)
               

               
               429-766, gnl|rheMac2|chr1 (35455960-35456285)
               

               
               429-766, gnl|rn3|chr5 (148481213-148480934)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               che (0.136314)
               

               
               ste (0.135208)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               che (0.136314)
               

               
               ste (0.135208)

	1-218, gnl\|bosTau2\|chr2 (73980331-73980114)
	1-218, gnl\|Hg17\|chr1 (32829775-32829558)
	1-218, gnl\|Mm7\|chr4 (128738807-128739024)

	429-766, gnl\|bosTau2\|chr2 (73972050-73971703)
	429-766, gnl\|canFam2\|chr2 (71530295-71529969)
	429-766, gnl\|dasNov1\|scaffold_84787 (282-604)
	429-766, gnl\|echTel1\|scaffold_71395 (7499-7842)
	429-766, gnl\|hg17\|chr1 (32816112-32816435)
	429-766, gnl\|Hg17\|chr1 (32816554-32816217)
	429-766, gnl\|loxAfr1\|scaffold_30578 (24906-25238)
	429-766, gnl\|mm7\|chr4 (128753088-128752796)
	429-766, gnl\|Mm7\|chr4 (128752689-128752981)
	429-766, gnl\|monDom2\|scaffold_43 (7058390-7058077)
	429-766, gnl\|oryCun1\|scaffold_209669 (43785-44108)
	429-766, gnl\|panTro1\|chr1 (33559753-33560076)
	429-766, gnl\|rheMac2\|chr1 (35455960-35456285)
	429-766, gnl\|rn3\|chr5 (148481213-148480934)