Ss1.1-rste35_h11.5
|
GGAAAAGCTCAATAATGAAATTGCTGCACATAAACGAGAATCAAAGAGCAGTGACAATGA
ACAAGAAACAAATGATGATGATGAAGATAATGAAGATGATGAAGACGATGAAGAAGATGA
TGCAGAAGATGAAGAAGATGAGGGTGATGAGAGTGATGAAAAAACAAAAGGAGAAGAGGA
AGGTGAGGTGAAGGAGCCAATCAGAAATGGTGAGAGCAACTGCCAGCAGGTCCCTAATAA
AGCATTTGAAGAACAGAAAGACAGACCAGAGGCCCAAGAAAAATTTGAGAAAAAGATATC
AAAATTAGATCCCAAGAAGCTGGCTCTAGATACCAGTTTTTTGAAAGTAAGTGCTCGGCC
TTCTGGAAACCAAACAGACCTGGATGGGAGCTTGAGGCGAGTGAGACAAAATGACCCTGA
CATGAAGGAACTCAACCTGAACAACATTGAAAACATCCCCAAAGAAATGTTATTGGACTT
TGTCAACGCGATGAAGAAAAACAAACACATCAAAACCTTCAGTTTAGCCAATGTGGGTGC
GGATGAGAACGTGGCTTTTGCCTTGGCTAACATGCTGCGTGAAAATCGGAGCATTACCAC
CCTCAACATCGAGTCCAACTTCATCACAGGCAAGGGAATCGTGGCCATCATGAGGTGTCT
CCAGTTTAATGAGACCCTCACCGAACTTCGGTTTCACAATCAAAGGCATATGTTGGGCCA
TCATGCTGAAATGGAAATATCCAGGCTTTTGAAGGCAAACACCACTCTTCTGAAGATGGG
GTACCATTTTGAGCTTCCAGGTCCCAGAATGGTGGTAACCAATCTGCTCACCAGGAATCA
GGATAAACAAAGGCAGAAAAGACAAGAAGAACAAAAACAGCAGCAACTCAAAGAGCAGAA
GAAGTTGATAGCCATGTTGGAGAACGGGTTGGGTCTGCCCCCTGGGATGTGGGAGATGCT
GGGAGGACCAATGCCCGATTCCCAGATGCAGGAGTTCCTCCAACCTCCTCCTCCTAAATC
TCTCCATCCCCAGACAGCCCCCTTCAGTCGACGAAATGAAGTAATGACAAAACCAGCTCA
GCCTCCGAAATACAGGACGGACCCCGACTCCTTCCGCGTGGTGAAGCTCAAGAGGATCCA
GCGCAAATCACGGATGCCGGAAGCCAGAGAACCACCTGAGAAAACCAACCTCAAAGATGT
GATCAAAACGCTCAAACCGGTGCCGAGAAATAGGCCACCCCCATTGGTGGAAATCACGCC
CAGAGATCAGCTCTTGAATGACATTCGTCACAGCAACATCGCCTATCTTAAACCTGTGCA
ACTGCCAAAAGAACTGGCATAAGCAGCAATGAAATAATCTAGAAGAAGAAACTGATGTAA
TGACTCCTGGATTAGAGCTTGCAGATGATTTCAGCGGTGTACTTCTGGATCCAGGTGGTG
GAATTGGGAACAATGCTAACATCTGATAGGAGTATTTTGTGAAAGGCAGAATGCTTGGCT
CAAGACAAGATAGGGGCTGAAAAGGCAGGGGGAAGGAGATAAAATATCAGTCTTTATCTT
GCACCTTTTCTACTTTGCAGTCAGTTTGAGTGACTTACATGAAATGTAGAGTCCTCCAAC
CAAAGTTAAAAATTTTTTTTTTCATAAATGTTTGCTTTACTATTGCTTTCTCCTGGTAAA
AAACAATAAATACTATAAAAGTTC
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GGAAAAGCTCAATAATGAAATTGCTGCACATAAACGAGAATCAAAGAGCAGTGACAATGA
ACAAGAAACAAATGATGATGATGAAGATAATGAAGATGATGAAGACGATGAAGAAGATGA
TGCAGAAGATGAAGAAGATGAGGGTGATGAGAGTGATGAAAAAACAAAAGGAGAAGAGGA
AGGTGAGGTGAAGGAGCCAATCAGAAATGGTGAGAGCAACTGCCAGCAGGTCCCTAATAA
AGCATTTGAAGAACAGAAAGACAGACCAGAGGCCCAAGAAAAATTTGAGAAAAAGATATC
AAAATTAGATCCCAAGAAGCTGGCTCTAGATACCAGTTTTTTGAAAGTAAGTGCTCGGCC
TTCTGGAAACCAAACAGACCTGGATGGGAGCTTGAGGCGAGTGAGACAAAATGACCCTGA
CATGAAGGAACTCAACCTGAACAACATTGAAAACATCCCCAAAGAAATGTTATTGGACTT
TGTCAACGCGATGAAGAAAAACAAACACATCAAAACCTTCAGTTTAGCCAATGTGGGTGC
GGATGAGAACGTGGCTTTTGCCTTGGCTAACATGCTGCGTGAAAATCGGAGCATTACCAC
CCTCAACATCGAGTCCAACTTCATCACAGGCAAGGGAATCGTGGCCATCATGAGGTGTCT
CCAGTTTAATGAGACCCTCACCGAACTTCGGTTTCACAATCAAAGGCATATGTTGGGCCA
TCATGCTGAAATGGAAATATCCAGGCTTTTGAAGGCAAACACCACTCTTCTGAAGATGGG
GTACCATTTTGAGCTTCCAGGTCCCAGAATGGTGGTAACCAATCTGCTCACCAGGAATCA
GGATAAACAAAGGCAGAAAAGACAAGAAGAACAAAAACAGCAGCAACTCAAAGAGCAGAA
GAAGTTGATAGCCATGTTGGAGAACGGGTTGGGTCTGCCCCCTGGGATGTGGGAGATGCT
GGGAGGACCAATGCCCGATTCCCAGATGCAGGAGTTCCTCCAACCTCCTCCTCCTAAATC
TCTCCATCCCCAGACAGCCCCCTTCAGTCGACGAAATGAAGTAATGACAAAACCAGCTCA
GCCTCCGAAATACAGGACGGACCCCGACTCCTTCCGCGTGGTGAAGCTCAAGAGGATCCA
GCGCAAATCACGGATGCCGGAAGCCAGAGAACCACCTGAGAAAACCAACCTCAAAGATGT
GATCAAAACGCTCAAACCGGTGCCGAGAAATAGGCCACCCCCATTGGTGGAAATCACGCC
CAGAGATCAGCTCTTGAATGACATTCGTCACAGCAACATCGCCTATCTTAAACCTGTGCA
ACTGCCAAAAGAACTGGCATAAGCAGCAATGAAATAATCTAGAAGAAGAAACTGATGTAA
TGACTCCTGGATTAGAGCTTGCAGATGATTTCAGCGGTGTACTTCTGGATCCAGGTGGTG
GAATTGGGAACAATGCTAACATCTGATAGGAGTATTTTGTGAAAGGCAGAATGCTTGGCT
CAAGACAAGATAGGGGCTGAAAAGGCAGGGGGAAGGAGATAAAATATCAGTCTTTATCTT
GCACCTTTTCTACTTTGCAGTCAGTTTGAGTGACTTACATGAAATGTAGAGTCCTCCAAC
CAAAGTTAAAAATTTTTTTTTTCATAAATGTTTGCTTTACTATTGCTTTCTCCTGGTAAA
AAACAATAAATACTATAAAAGTTC
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
isp (1.80451) |
|
tbr (1.3876) |
|
ste (1.21687) |
|
bfe (0.899146) |
|
ldo (0.776021) |
|
vin (0.665115) |
|
ssp (0.542079) |
|
nms (0.427716) |
|
mas (0.42061) |
|
eye (0.170503) |
|
eru (0.120048) |
|
isp (1.80451) |
|
tbr (1.3876) |
|
ste (1.21687) |
|
bfe (0.899146) |
|
ldo (0.776021) |
|
vin (0.665115) |
|
ssp (0.542079) |
|
nms (0.427716) |
|
mas (0.42061) |
|
eye (0.170503) |
|
eru (0.120048) |