Non-Coding RNA Search

Ss1.1-rste35_i1.5

Sequence:


               
               CCTTTGCATGCTTTGAAAATAACTGAATGTTGCTAATGATATAAAATGATAGTTTCATAA
ATAGTTCAACATTTGGTATCTCTATAAGCAAATAATGTTATGCATATACATGATATATAT
GGTCAATTGTATTTAATTATACAGTCAATTGTATAGTAATGGAATGTAATAATATAAATA
ATGTATTCTGCCATATAAGTTTTAATAAGGTATCAACTGTGAAATATTGGTAAAAGCTTT
TGGTCCTAAAAATGAAGCCAAGATTGTTTATCATCAGATTGTTATCTGATAATAGGTGAC
TTGAATCAAGTTAAGCTGTGAAAAAAAAAAGGTAAGAATGTCAACCAAGAATAAATAAAT
ACTGGTGCACATATTCTAATTCTGCAGTGATATATCAAGGAGTAAATACCCCTGGACAAC
CAGTCTTCCTGGAGGGGCAGCAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTTTGCATGCTTTGAAAATAACTGAATGTTGCTAATGATATAAAATGATAGTTTCATAA
ATAGTTCAACATTTGGTATCTCTATAAGCAAATAATGTTATGCATATACATGATATATAT
GGTCAATTGTATTTAATTATACAGTCAATTGTATAGTAATGGAATGTAATAATATAAATA
ATGTATTCTGCCATATAAGTTTTAATAAGGTATCAACTGTGAAATATTGGTAAAAGCTTT
TGGTCCTAAAAATGAAGCCAAGATTGTTTATCATCAGATTGTTATCTGATAATAGGTGAC
TTGAATCAAGTTAAGCTGTGAAAAAAAAAAGGTAAGAATGTCAACCAAGAATAAATAAAT
ACTGGTGCACATATTCTAATTCTGCAGTGATATATCAAGGAGTAAATACCCCTGGACAAC
CAGTCTTCCTGGAGGGGCAGCAAC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               230-444, - strand, RNAz p=0.890665

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               230-444, - strand, RNAz p=0.890665

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-444, gnl|bosTau2|chr5 (39942048-39941622)
               

               
               3-444, gnl|Hg17|chr12 (100578470-100578906)
               

               
               3-444, gnl|Mm7|chr10 (88079627-88079186)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-444, gnl|bosTau2|chr5 (39942048-39941622)
               

               
               3-444, gnl|Hg17|chr12 (100578470-100578906)
               

               
               3-444, gnl|Mm7|chr10 (88079627-88079186)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               sme (0.305437)
               

               
               nms (0.213858)
               

               
               ste (0.135208)
               

               
               ese (0.126502)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sme (0.305437)
               

               
               nms (0.213858)
               

               
               ste (0.135208)
               

               
               ese (0.126502)

	3-444, gnl\|bosTau2\|chr5 (39942048-39941622)
	3-444, gnl\|Hg17\|chr12 (100578470-100578906)
	3-444, gnl\|Mm7\|chr10 (88079627-88079186)