Non-Coding RNA Search

Ss1.1-rste35_j22.5

Sequence:


               
               CTCACATCTCGGGCCCCAATGGACAGATCACCCGAGGAGCTGGAGGGGTCGGCCAAGCTG
ACTGTAAATGTCACAGTCCCTCTGGAGAAACCATTGTGCTTTTGAGACCCCAGCCCCCTT
CCTCAATGGAGGCTTGAGGGCCCTGGGACATGTTGTGCTATCTGATAAGGTTGGGTCATC
GCTGCCAAGGTGGAGAGCAATGAGCAAGGGGCTTGGGGCAATTTCCAGTGGAGGATAACT
ACACCTCCATTTATGCTTGTGGTTCACACATTTAAGTTTACAAATGATATTTCTTTTTCC
CCTCAGTAGAAATAGATTTTGTTTTTCAACCATAACTTCAAATATAATCCTAAGAGCTAA
TGTGGACTTTTTTTTTTCCCCCCCATGAAATGTCTTTAAAAGATGAATTAGCATGGTCTT
AAAATACATTTCTGAGGTTACTAAGCTGTATTTTGAATTATGGGCAAAATGCTGAGAAAC
CCAGTTGGCATTTATACAAAATGCTGACCTCAGGTCTATAGTTCTTAAATGTGGCTAATT
CTGTAATATAGTCTTGGTATTTTTCAATTATGAATAGATAACCTATTTCTAGGCAGACTC
TCTTACTTGAACACAAATCCAAAAACTAATTTACAGTCTTTCTTGCCCAGATCTTTTGAG
ATTTACATCCTAGAAATTTAAGAAGAAAACCTCTAAATTTCAGAATTATGGAGAATTACA
GAATTACTCATTTAAGGTACTTTGGAAGAAGTTTGTACATTGTCAAAGTAAATTTTAATT
CAAATCATGTCTGTAAAACTTGACGTATTTTGTGTATGCATGTTTTCATTTTGCAAATAT
TTAATATATAGACCTATGATGTACAGGTACGACATGTATAGGTTACCTAGATGTTATGAG
AAATTTTAGTTTATTGTGAGTACTCAAGTTGCTTAAATAGCCACCAGGGTGATTAACTGC
TGGCTTTCTATCGTTTTTATGTTTTGATGCAAAGGAAATTTTTAAATGTTCTGGAAGTGT
TTTTGATTAAGCAGTACAGCATAGAAGCAATGGTTCTGTTCAGTCATTCAGATGTTAGTG
GAAGCATAAAAGTCAAGACTGCATGTTGAACATTTTCTTTGGATAGTTACAGAACTGCTT
GGTTAAACTAAATGGAACCATGTGCTAATTCTTCACAATTACTGACCTGTATTGATTGCC
ACTGTAGTTTGGTATTTTCCTTTACTTTGGTGGCCTGCTTCCCTCATGCCCTGGAATACA
ACTCAGAGCTCCAGGCAGCGGAACCATCTATTGTTTGTTTGCCAGAAAGTGCACCCTGTA
TGGTCTCCTGTCTAAGTTGGAAATATTATGCATGTGCAGGACTATTCGAGTATTTTATAA
ACAGTAGCACACAATAAATTCCATGCATGGGCCGCTGCTCCTATCTCTGTGTTGGGTTTT
ATTTGGAAGATGTAGTCTGATTTGACCTTTTCATGCAAATCAGAAAATCTTGTTAATGGA
ACTGGGATATATCCTTCAGAAAAAAAAAATATCTTATGGATAGTTCATGGTAATTTGATG
AATTAAATTCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCACATCTCGGGCCCCAATGGACAGATCACCCGAGGAGCTGGAGGGGTCGGCCAAGCTG
ACTGTAAATGTCACAGTCCCTCTGGAGAAACCATTGTGCTTTTGAGACCCCAGCCCCCTT
CCTCAATGGAGGCTTGAGGGCCCTGGGACATGTTGTGCTATCTGATAAGGTTGGGTCATC
GCTGCCAAGGTGGAGAGCAATGAGCAAGGGGCTTGGGGCAATTTCCAGTGGAGGATAACT
ACACCTCCATTTATGCTTGTGGTTCACACATTTAAGTTTACAAATGATATTTCTTTTTCC
CCTCAGTAGAAATAGATTTTGTTTTTCAACCATAACTTCAAATATAATCCTAAGAGCTAA
TGTGGACTTTTTTTTTTCCCCCCCATGAAATGTCTTTAAAAGATGAATTAGCATGGTCTT
AAAATACATTTCTGAGGTTACTAAGCTGTATTTTGAATTATGGGCAAAATGCTGAGAAAC
CCAGTTGGCATTTATACAAAATGCTGACCTCAGGTCTATAGTTCTTAAATGTGGCTAATT
CTGTAATATAGTCTTGGTATTTTTCAATTATGAATAGATAACCTATTTCTAGGCAGACTC
TCTTACTTGAACACAAATCCAAAAACTAATTTACAGTCTTTCTTGCCCAGATCTTTTGAG
ATTTACATCCTAGAAATTTAAGAAGAAAACCTCTAAATTTCAGAATTATGGAGAATTACA
GAATTACTCATTTAAGGTACTTTGGAAGAAGTTTGTACATTGTCAAAGTAAATTTTAATT
CAAATCATGTCTGTAAAACTTGACGTATTTTGTGTATGCATGTTTTCATTTTGCAAATAT
TTAATATATAGACCTATGATGTACAGGTACGACATGTATAGGTTACCTAGATGTTATGAG
AAATTTTAGTTTATTGTGAGTACTCAAGTTGCTTAAATAGCCACCAGGGTGATTAACTGC
TGGCTTTCTATCGTTTTTATGTTTTGATGCAAAGGAAATTTTTAAATGTTCTGGAAGTGT
TTTTGATTAAGCAGTACAGCATAGAAGCAATGGTTCTGTTCAGTCATTCAGATGTTAGTG
GAAGCATAAAAGTCAAGACTGCATGTTGAACATTTTCTTTGGATAGTTACAGAACTGCTT
GGTTAAACTAAATGGAACCATGTGCTAATTCTTCACAATTACTGACCTGTATTGATTGCC
ACTGTAGTTTGGTATTTTCCTTTACTTTGGTGGCCTGCTTCCCTCATGCCCTGGAATACA
ACTCAGAGCTCCAGGCAGCGGAACCATCTATTGTTTGTTTGCCAGAAAGTGCACCCTGTA
TGGTCTCCTGTCTAAGTTGGAAATATTATGCATGTGCAGGACTATTCGAGTATTTTATAA
ACAGTAGCACACAATAAATTCCATGCATGGGCCGCTGCTCCTATCTCTGTGTTGGGTTTT
ATTTGGAAGATGTAGTCTGATTTGACCTTTTCATGCAAATCAGAAAATCTTGTTAATGGA
ACTGGGATATATCCTTCAGAAAAAAAAAATATCTTATGGATAGTTCATGGTAATTTGATG
AATTAAATTCTT

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

Help | Less info


               
               39-237, - strand, RNAz p=0.870659
               

               
               426-545, + strand, RNAz p=0.939716
               

               
               1171-1409, - strand, RNAz p=0.87275

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               39-237, - strand, RNAz p=0.870659
               

               
               426-545, + strand, RNAz p=0.939716
               

               
               1171-1409, - strand, RNAz p=0.87275

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               1366-1491, - strand, RNAmicro p=0.996325
               

               
               446-571, + strand, RNAmicro p=0.994563

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               1366-1491, - strand, RNAmicro p=0.996325
               

               
               446-571, + strand, RNAmicro p=0.994563

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_021132, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_021132, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1572, gnl|bosTau2|chr28 (22651720-22650161)
               

               
               1-1572, gnl|Hg17|chr10 (74867985-74866432)
               

               
               1-1572, gnl|Mm7|chr14 (18158020-18156445)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1572, gnl|bosTau2|chr28 (22651720-22650161)
               

               
               1-1572, gnl|Hg17|chr10 (74867985-74866432)
               

               
               1-1572, gnl|Mm7|chr14 (18158020-18156445)

Expressed library(ies): 24 entry(ies)

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Expressed library(ies): 24 entry(ies)

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               tbr (0.925069)
               

               
               ldo (0.582016)
               

               
               fce (0.543183)
               

               
               ste (0.540833)
               

               
               fcc (0.39557)
               

               
               fco (0.314416)
               

               
               liv (0.292569)
               

               
               spl (0.286369)
               

               
               ecc (0.23007)
               

               
               cbl (0.229595)
               

               
               ece (0.229305)
               

               
               fli (0.202881)
               

               
               ill (0.175593)
               

               
               fbs (0.175346)
               

               
               rec (0.17307)
               

               
               duo (0.172801)
               

               
               bfe (0.149858)
               

               
               fat (0.147427)
               

               
               hyp (0.142837)
               

               
               lyg (0.133103)
               

               
               ret (0.128733)
               

               
               ebs (0.118301)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)

Expressed library(ies): 24 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tbr (0.925069)
               

               
               ldo (0.582016)
               

               
               fce (0.543183)
               

               
               ste (0.540833)
               

               
               fcc (0.39557)
               

               
               fco (0.314416)
               

               
               liv (0.292569)
               

               
               spl (0.286369)
               

               
               ecc (0.23007)
               

               
               cbl (0.229595)
               

               
               ece (0.229305)
               

               
               fli (0.202881)
               

               
               ill (0.175593)
               

               
               fbs (0.175346)
               

               
               rec (0.17307)
               

               
               duo (0.172801)
               

               
               bfe (0.149858)
               

               
               fat (0.147427)
               

               
               hyp (0.142837)
               

               
               lyg (0.133103)
               

               
               ret (0.128733)
               

               
               ebs (0.118301)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)

	39-237, - strand, RNAz p=0.870659
	426-545, + strand, RNAz p=0.939716
	1171-1409, - strand, RNAz p=0.87275

	1366-1491, - strand, RNAmicro p=0.996325
	446-571, + strand, RNAmicro p=0.994563

	1-1572, gnl\|bosTau2\|chr28 (22651720-22650161)
	1-1572, gnl\|Hg17\|chr10 (74867985-74866432)
	1-1572, gnl\|Mm7\|chr14 (18158020-18156445)

	tbr (0.925069)
	ldo (0.582016)
	fce (0.543183)
	ste (0.540833)
	fcc (0.39557)
	fco (0.314416)
	liv (0.292569)
	spl (0.286369)
	ecc (0.23007)
	cbl (0.229595)
	ece (0.229305)
	fli (0.202881)
	ill (0.175593)
	fbs (0.175346)
	rec (0.17307)
	duo (0.172801)
	bfe (0.149858)
	fat (0.147427)
	hyp (0.142837)
	lyg (0.133103)
	ret (0.128733)
	ebs (0.118301)
	cty (0.10408)
	jej (0.0989218)