Ss1.1-rsto204_h18.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAGGGGTACACTCCCTTGATGGAAGCTGCTCGGGAAGGACATGAAGAAATGGTGGCACTA GTCTTAGCACAAGGAGCAAATATAAATGCCCAGACGGAAGAAACCCAAGAAACTGCTCTG ACTCTGGCTTGCTGCGGAGGGTTTGCTGAAGTTGCAGACTTCCTGATTAAAGCAGGGGCT GACATAGAACTCGGCTGTTCCACACCGCTGATGGAAGCTTCTCAAGAGGGACACCTGGAG TTAGTTAAATACTTACTGGCTGCCGGTGCTAATGTTCATGCTACAACAGCAACAGGAGAC ACAGCCTTAACCTACGCTTGTGAAAATGGACATACGGATGTTGCAGATGTTTTACTTCAA GCAGGGGCTGATTTAGACAAGCAGGAGGACATGAAGACTATTTTGGAGGGCATAGATCCG GCCAAGCATCAGGTGAGGGTGGCCTTTGATGCTTGTAAGCTCCTACATAAAGAATAGATG ATGTAGATAACCAGAACTCTGGATATCTCAATCCAGCCAAGAAGTTCCAGGACCCTGCTG GGTGACAAAGGAAATCCTCTTCAGTTGAAAAATGAAGTTCCAATAAAAAGAGATTGACAG TAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAGGGGTACACTCCCTTGATGGAAGCTGCTCGGGAAGGACATGAAGAAATGGTGGCACTA GTCTTAGCACAAGGAGCAAATATAAATGCCCAGACGGAAGAAACCCAAGAAACTGCTCTG ACTCTGGCTTGCTGCGGAGGGTTTGCTGAAGTTGCAGACTTCCTGATTAAAGCAGGGGCT GACATAGAACTCGGCTGTTCCACACCGCTGATGGAAGCTTCTCAAGAGGGACACCTGGAG TTAGTTAAATACTTACTGGCTGCCGGTGCTAATGTTCATGCTACAACAGCAACAGGAGAC ACAGCCTTAACCTACGCTTGTGAAAATGGACATACGGATGTTGCAGATGTTTTACTTCAA GCAGGGGCTGATTTAGACAAGCAGGAGGACATGAAGACTATTTTGGAGGGCATAGATCCG GCCAAGCATCAGGTGAGGGTGGCCTTTGATGCTTGTAAGCTCCTACATAAAGAATAGATG ATGTAGATAACCAGAACTCTGGATATCTCAATCCAGCCAAGAAGTTCCAGGACCCTGCTG GGTGACAAAGGAAATCCTCTTCAGTTGAAAAATGAAGTTCCAATAAAAAGAGATTGACAG TAAAAAAAAAAA |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 376-489, + strand, RNAz p=0.535174 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 376-489, + strand, RNAz p=0.535174 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of BC004457, + |
| Aligned organism(s): 50 entry(ies) | More info |
| Aligned organism(s): 50 entry(ies) | Help | Less info |
| 72-267, gnl|bosTau2|chr18 (27130691-27130496) | |
| 72-267, gnl|canFam2|chr13 (64889827-64890043) | |
| 72-267, gnl|canFam2|chr2 (38518676-38518883) | |
| 72-267, gnl|danRer3|chrNA (215252288-215252077) | |
| 72-267, gnl|danRer3|chrNA (215252077-215252275) | |
| 72-267, gnl|dasNov1|scaffold_28071 (12947-12730) | |
| 72-267, gnl|dasNov1|scaffold_43037 (6099-5892) | |
| 72-267, gnl|echTel1|scaffold_296160 (5124-4904) | |
| 72-267, gnl|echTel1|scaffold_296160 (4907-5126) | |
| 72-267, gnl|fr1|chrUn (109682172-109682379) | |
| 72-267, gnl|fr1|chrUn (109682376-109682171) | |
| 72-267, gnl|galGal2|chr13 (866727-866931) | |
| 72-267, gnl|galGal2|chr4 (51299372-51299589) | |
| 72-267, gnl|hg17|chr4 (74377977-74378194) | |
| 72-267, gnl|Hg17|chr4 (74378186-74377991) | |
| 72-267, gnl|hg17|chr5 (139818928-139819147) | |
| 72-267, gnl|loxAfr1|scaffold_17605 (31185-31405) | |
| 72-267, gnl|loxAfr1|scaffold_17605 (31402-31184) | |
| 72-267, gnl|mm7|chr18 (36971037-36971254) | |
| 72-267, gnl|mm7|chr5 (90260332-90260553) | |
| 72-267, gnl|Mm7|chr5 (90260545-90260350) | |
| 72-267, gnl|monDom2|scaffold_32 (18315334-18315552) | |
| 72-267, gnl|monDom2|scaffold_6 (68301743-68301538) | |
| 72-267, gnl|oryCun1|scaffold_211608 (119724-119507) | |
| 72-267, gnl|oryCun1|scaffold_211608 (119512-119734) | |
| 72-267, gnl|panTro1|chr3 (59339965-59339748) | |
| 72-267, gnl|panTro1|chr4 (146435064-146435283) | |
| 72-267, gnl|rheMac2|chr5 (56537031-56536814) | |
| 72-267, gnl|rheMac2|chr6 (136877084-136877303) | |
| 72-267, gnl|rn3|chr14 (19327408-19327190) | |
| 72-267, gnl|rn3|chr18 (29262016-29262233) | |
| 72-267, gnl|tetNig1|chr1 (2391779-2391979) | |
| 72-267, gnl|tetNig1|chr1 (2391983-2391784) | |
| 72-267, gnl|xenTro1|scaffold_307 (1273211-1272999) | |
| 72-267, gnl|xenTro1|scaffold_716 (567993-568213) | |
| 376-602, gnl|bosTau2|chr7 (30637054-30636822) | |
| 376-602, gnl|canFam2|chr2 (38530311-38530476) | |
| 376-602, gnl|dasNov1|scaffold_2163 (79432-79267) | |
| 376-602, gnl|echTel1|scaffold_239352 (12562-12383) | |
| 376-602, gnl|galGal2|chr13 (874103-874272) | |
| 376-602, gnl|hg17|chr5 (139832000-139832165) | |
| 376-602, gnl|Hg17|chr5 (139832008-139832240) | |
| 376-602, gnl|loxAfr1|scaffold_17605 (16580-16418) | |
| 376-602, gnl|mm7|chr18 (36984092-36984243) | |
| 376-602, gnl|Mm7|chr18 (36984100-36984316) | |
| 376-602, gnl|monDom2|scaffold_6 (68293783-68293611) | |
| 376-602, gnl|oryCun1|scaffold_198405 (119271-119108) | |
| 376-602, gnl|panTro1|chr4 (146448250-146448415) | |
| 376-602, gnl|rheMac2|chr6 (136890069-136890234) | |
| 376-602, gnl|rn3|chr18 (29275143-29275294) |
| Aligned organism(s): 50 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 72-267, gnl|bosTau2|chr18 (27130691-27130496) | |
| 72-267, gnl|canFam2|chr13 (64889827-64890043) | |
| 72-267, gnl|canFam2|chr2 (38518676-38518883) | |
| 72-267, gnl|danRer3|chrNA (215252288-215252077) | |
| 72-267, gnl|danRer3|chrNA (215252077-215252275) | |
| 72-267, gnl|dasNov1|scaffold_28071 (12947-12730) | |
| 72-267, gnl|dasNov1|scaffold_43037 (6099-5892) | |
| 72-267, gnl|echTel1|scaffold_296160 (5124-4904) | |
| 72-267, gnl|echTel1|scaffold_296160 (4907-5126) | |
| 72-267, gnl|fr1|chrUn (109682172-109682379) | |
| 72-267, gnl|fr1|chrUn (109682376-109682171) | |
| 72-267, gnl|galGal2|chr13 (866727-866931) | |
| 72-267, gnl|galGal2|chr4 (51299372-51299589) | |
| 72-267, gnl|hg17|chr4 (74377977-74378194) | |
| 72-267, gnl|Hg17|chr4 (74378186-74377991) | |
| 72-267, gnl|hg17|chr5 (139818928-139819147) | |
| 72-267, gnl|loxAfr1|scaffold_17605 (31185-31405) | |
| 72-267, gnl|loxAfr1|scaffold_17605 (31402-31184) | |
| 72-267, gnl|mm7|chr18 (36971037-36971254) | |
| 72-267, gnl|mm7|chr5 (90260332-90260553) | |
| 72-267, gnl|Mm7|chr5 (90260545-90260350) | |
| 72-267, gnl|monDom2|scaffold_32 (18315334-18315552) | |
| 72-267, gnl|monDom2|scaffold_6 (68301743-68301538) | |
| 72-267, gnl|oryCun1|scaffold_211608 (119724-119507) | |
| 72-267, gnl|oryCun1|scaffold_211608 (119512-119734) | |
| 72-267, gnl|panTro1|chr3 (59339965-59339748) | |
| 72-267, gnl|panTro1|chr4 (146435064-146435283) | |
| 72-267, gnl|rheMac2|chr5 (56537031-56536814) | |
| 72-267, gnl|rheMac2|chr6 (136877084-136877303) | |
| 72-267, gnl|rn3|chr14 (19327408-19327190) | |
| 72-267, gnl|rn3|chr18 (29262016-29262233) | |
| 72-267, gnl|tetNig1|chr1 (2391779-2391979) | |
| 72-267, gnl|tetNig1|chr1 (2391983-2391784) | |
| 72-267, gnl|xenTro1|scaffold_307 (1273211-1272999) | |
| 72-267, gnl|xenTro1|scaffold_716 (567993-568213) | |
| 376-602, gnl|bosTau2|chr7 (30637054-30636822) | |
| 376-602, gnl|canFam2|chr2 (38530311-38530476) | |
| 376-602, gnl|dasNov1|scaffold_2163 (79432-79267) | |
| 376-602, gnl|echTel1|scaffold_239352 (12562-12383) | |
| 376-602, gnl|galGal2|chr13 (874103-874272) | |
| 376-602, gnl|hg17|chr5 (139832000-139832165) | |
| 376-602, gnl|Hg17|chr5 (139832008-139832240) | |
| 376-602, gnl|loxAfr1|scaffold_17605 (16580-16418) | |
| 376-602, gnl|mm7|chr18 (36984092-36984243) | |
| 376-602, gnl|Mm7|chr18 (36984100-36984316) | |
| 376-602, gnl|monDom2|scaffold_6 (68293783-68293611) | |
| 376-602, gnl|oryCun1|scaffold_198405 (119271-119108) | |
| 376-602, gnl|panTro1|chr4 (146448250-146448415) | |
| 376-602, gnl|rheMac2|chr6 (136890069-136890234) | |
| 376-602, gnl|rn3|chr18 (29275143-29275294) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| vin (0.332557) | |
| sto (0.179824) |