Non-Coding RNA Search

Ss1.1-rsto204_j15.5

Sequence:


               
               GAAAAACCAACTCCTCATCTTAACCTGCAGGAAAACGCCAAACACACTATGGAACTCGGC
TGACGGGGACCCCAGCGCCGATCTGCTCAGCCAGCCCATGGCGCGAGGCAGGCACCAGCG
CCACCTCAGCGCGGACACCCTGTGGCCGGGAGGGGCAGGGGGCTGAGGCTCGCCTTCCTG
CAGTCATCCTCTTTGCACTTTGTTACTCTTTCAAAGCATTCATAAACTTTTGTACCTAGC
TTGAGCCTGTACCAGTTCATCAAAGGAAACCAACCGGGGGCTAACTACAGTGTGGTTAGA
ATCCTAATTAATAGCTACTTTAAGATCCTAGGGTTGGTTGGATTTTTTGTTATTTTGGGG
GGTTTTTTGTTTGTTTTGTTTTTAAAAACAGAATTCTTAATAGATTTGAATAGCACTGTA
TTTCCCATCATAGTCATTTTTAGCTAGGTTACACCATCAGGTCTTTGNTACTGNAACGTA
TGGTTGAAGAGCCCCTGCCGATTGGCGGAACCTCCTGCGGCTCACGTAATGTCCATCTTC
ATTCCCGTCCATCCTCGTGGATGGGCCCCTGTTTTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAAAACCAACTCCTCATCTTAACCTGCAGGAAAACGCCAAACACACTATGGAACTCGGC
TGACGGGGACCCCAGCGCCGATCTGCTCAGCCAGCCCATGGCGCGAGGCAGGCACCAGCG
CCACCTCAGCGCGGACACCCTGTGGCCGGGAGGGGCAGGGGGCTGAGGCTCGCCTTCCTG
CAGTCATCCTCTTTGCACTTTGTTACTCTTTCAAAGCATTCATAAACTTTTGTACCTAGC
TTGAGCCTGTACCAGTTCATCAAAGGAAACCAACCGGGGGCTAACTACAGTGTGGTTAGA
ATCCTAATTAATAGCTACTTTAAGATCCTAGGGTTGGTTGGATTTTTTGTTATTTTGGGG
GGTTTTTTGTTTGTTTTGTTTTTAAAAACAGAATTCTTAATAGATTTGAATAGCACTGTA
TTTCCCATCATAGTCATTTTTAGCTAGGTTACACCATCAGGTCTTTGNTACTGNAACGTA
TGGTTGAAGAGCCCCTGCCGATTGGCGGAACCTCCTGCGGCTCACGTAATGTCCATCTTC
ATTCCCGTCCATCCTCGTGGATGGGCCCCTGTTTTA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               251-356, - strand, RNAz p=0.993553

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               251-356, - strand, RNAz p=0.993553

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               1-356, gnl|bosTau2|chr17 (30582215-30582588)
               

               
               1-356, gnl|canFam2|chr26 (18747744-18748019)
               

               
               1-356, gnl|dasNov1|scaffold_1999 (172679-172370)
               

               
               1-356, gnl|echTel1|scaffold_290090 (121305-120985)
               

               
               1-356, gnl|galGal2|chr15 (9559024-9558739)
               

               
               1-356, gnl|hg17|chr12 (118588328-118588644)
               

               
               1-356, gnl|Hg17|chr12 (118588746-118588325)
               

               
               1-356, gnl|loxAfr1|scaffold_1285 (60030-59722)
               

               
               1-356, gnl|mm7|chr5 (115236316-115235991)
               

               
               1-356, gnl|Mm7|chr5 (115235831-115236319)
               

               
               1-356, gnl|monDom2|scaffold_101 (668398-668185)
               

               
               1-356, gnl|oryCun1|scaffold_191138 (132411-132133)
               

               
               1-356, gnl|panTro1|chr10 (121587115-121587432)
               

               
               1-356, gnl|rheMac2|chr11 (120672900-120673208)
               

               
               1-356, gnl|rn3|chr12 (41721076-41721429)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-356, gnl|bosTau2|chr17 (30582215-30582588)
               

               
               1-356, gnl|canFam2|chr26 (18747744-18748019)
               

               
               1-356, gnl|dasNov1|scaffold_1999 (172679-172370)
               

               
               1-356, gnl|echTel1|scaffold_290090 (121305-120985)
               

               
               1-356, gnl|galGal2|chr15 (9559024-9558739)
               

               
               1-356, gnl|hg17|chr12 (118588328-118588644)
               

               
               1-356, gnl|Hg17|chr12 (118588746-118588325)
               

               
               1-356, gnl|loxAfr1|scaffold_1285 (60030-59722)
               

               
               1-356, gnl|mm7|chr5 (115236316-115235991)
               

               
               1-356, gnl|Mm7|chr5 (115235831-115236319)
               

               
               1-356, gnl|monDom2|scaffold_101 (668398-668185)
               

               
               1-356, gnl|oryCun1|scaffold_191138 (132411-132133)
               

               
               1-356, gnl|panTro1|chr10 (121587115-121587432)
               

               
               1-356, gnl|rheMac2|chr11 (120672900-120673208)
               

               
               1-356, gnl|rn3|chr12 (41721076-41721429)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

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               sto (0.179824)
               

               
               eli (0.151814)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sto (0.179824)
               

               
               eli (0.151814)

	1-356, gnl\|bosTau2\|chr17 (30582215-30582588)
	1-356, gnl\|canFam2\|chr26 (18747744-18748019)
	1-356, gnl\|dasNov1\|scaffold_1999 (172679-172370)
	1-356, gnl\|echTel1\|scaffold_290090 (121305-120985)
	1-356, gnl\|galGal2\|chr15 (9559024-9558739)
	1-356, gnl\|hg17\|chr12 (118588328-118588644)
	1-356, gnl\|Hg17\|chr12 (118588746-118588325)
	1-356, gnl\|loxAfr1\|scaffold_1285 (60030-59722)
	1-356, gnl\|mm7\|chr5 (115236316-115235991)
	1-356, gnl\|Mm7\|chr5 (115235831-115236319)
	1-356, gnl\|monDom2\|scaffold_101 (668398-668185)
	1-356, gnl\|oryCun1\|scaffold_191138 (132411-132133)
	1-356, gnl\|panTro1\|chr10 (121587115-121587432)
	1-356, gnl\|rheMac2\|chr11 (120672900-120673208)
	1-356, gnl\|rn3\|chr12 (41721076-41721429)