Non-Coding RNA Search

Ss1.1-rsto206_i8.5

Sequence:


               
               TTCAAGGGTTAAGAAAGTATGACCCTCCTGTGGGGATGGAAGAAGAGGGGACCCGGACGG
TGGATGAGGGCTGGTGCCTATCCAAGCAGAGTATTAGTTGCGGAAAGGAAAGAACTGACT
TAAAACCAACTTCCCTAAGGTGATGGTTTTCTCTTTGACACTTTGGATTTCAGCAGACTA
TTGGGTTTCTGAGTGGATGGATTAAAGAGAAGTACCATTTGAGGTTGGCTTTTTTTTGCG
CTCAATCTCTTATAATCTTATTTTTGTCTGCATGAAGGCATTAGCATGCATTTCTGGGCT
CTCAGCCAGGATGAGTCATTTTTCTTTGCCTGTTTCCTCGTCTCCATGGTGCCCTGGTCT
TTGCCAGAACCGAACATCGGTCCCAGTCAGGAACCGCTCCAGGGATCCCGACCCCCCAGC
CTGGTGCCTGGTTACCCCTCCTGCTCATTTGGTGGAGCCCACCTCCAACAAGCGCCCCTG
GCAGGGCGAGGCGCCAGGGACAATGCCACTTGGAATCTGAGAAGTAACTTGGTGCCGTGC
CCAGATCAACTTTTCATCACCTTAGAAAAGAGATGGGTTTGGGACATTTCAATCTCCGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCAAGGGTTAAGAAAGTATGACCCTCCTGTGGGGATGGAAGAAGAGGGGACCCGGACGG
TGGATGAGGGCTGGTGCCTATCCAAGCAGAGTATTAGTTGCGGAAAGGAAAGAACTGACT
TAAAACCAACTTCCCTAAGGTGATGGTTTTCTCTTTGACACTTTGGATTTCAGCAGACTA
TTGGGTTTCTGAGTGGATGGATTAAAGAGAAGTACCATTTGAGGTTGGCTTTTTTTTGCG
CTCAATCTCTTATAATCTTATTTTTGTCTGCATGAAGGCATTAGCATGCATTTCTGGGCT
CTCAGCCAGGATGAGTCATTTTTCTTTGCCTGTTTCCTCGTCTCCATGGTGCCCTGGTCT
TTGCCAGAACCGAACATCGGTCCCAGTCAGGAACCGCTCCAGGGATCCCGACCCCCCAGC
CTGGTGCCTGGTTACCCCTCCTGCTCATTTGGTGGAGCCCACCTCCAACAAGCGCCCCTG
GCAGGGCGAGGCGCCAGGGACAATGCCACTTGGAATCTGAGAAGTAACTTGGTGCCGTGC
CCAGATCAACTTTTCATCACCTTAGAAAAGAGATGGGTTTGGGACATTTCAATCTCCGCT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               122-227, - strand, RNAz p=0.946854

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               122-227, - strand, RNAz p=0.946854

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               132-246, + strand, RNAmicro p=0.999208

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               132-246, + strand, RNAmicro p=0.999208

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               8-600, gnl|bosTau2|chr13 (56883357-56882740)
               

               
               8-600, gnl|canFam2|chr24 (38190171-38190981)
               

               
               8-600, gnl|dasNov1|scaffold_8151 (62300-61534)
               

               
               8-600, gnl|echTel1|scaffold_270008 (13704-12914)
               

               
               8-600, gnl|hg17|chr20 (46361060-46361870)
               

               
               8-600, gnl|Hg17|chr20 (46361751-46361138)
               

               
               8-600, gnl|mm7|chr2 (166174101-166174862)
               

               
               8-600, gnl|Mm7|chr2 (166174760-166174153)
               

               
               8-600, gnl|oryCun1|scaffold_111856 (10554-11305)
               

               
               8-600, gnl|panTro1|chr21 (48953335-48954146)
               

               
               8-600, gnl|rheMac2|chr10 (16179551-16178747)
               

               
               8-600, gnl|rn3|chr3_random (1433876-1434562)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               8-600, gnl|bosTau2|chr13 (56883357-56882740)
               

               
               8-600, gnl|canFam2|chr24 (38190171-38190981)
               

               
               8-600, gnl|dasNov1|scaffold_8151 (62300-61534)
               

               
               8-600, gnl|echTel1|scaffold_270008 (13704-12914)
               

               
               8-600, gnl|hg17|chr20 (46361060-46361870)
               

               
               8-600, gnl|Hg17|chr20 (46361751-46361138)
               

               
               8-600, gnl|mm7|chr2 (166174101-166174862)
               

               
               8-600, gnl|Mm7|chr2 (166174760-166174153)
               

               
               8-600, gnl|oryCun1|scaffold_111856 (10554-11305)
               

               
               8-600, gnl|panTro1|chr21 (48953335-48954146)
               

               
               8-600, gnl|rheMac2|chr10 (16179551-16178747)
               

               
               8-600, gnl|rn3|chr3_random (1433876-1434562)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               sto (0.359648)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sto (0.359648)

	8-600, gnl\|bosTau2\|chr13 (56883357-56882740)
	8-600, gnl\|canFam2\|chr24 (38190171-38190981)
	8-600, gnl\|dasNov1\|scaffold_8151 (62300-61534)
	8-600, gnl\|echTel1\|scaffold_270008 (13704-12914)
	8-600, gnl\|hg17\|chr20 (46361060-46361870)
	8-600, gnl\|Hg17\|chr20 (46361751-46361138)
	8-600, gnl\|mm7\|chr2 (166174101-166174862)
	8-600, gnl\|Mm7\|chr2 (166174760-166174153)
	8-600, gnl\|oryCun1\|scaffold_111856 (10554-11305)
	8-600, gnl\|panTro1\|chr21 (48953335-48954146)
	8-600, gnl\|rheMac2\|chr10 (16179551-16178747)
	8-600, gnl\|rn3\|chr3_random (1433876-1434562)