Non-Coding RNA Search

Ss1.1-rsto211_k16.5

Sequence:


               
               TAAGGCCCGTTGAACGCGTGCGGGGAGGAGGTTTCTTCCGGCCGGAGCGAGGGGGCAACT
GGATACGTTGAAGGACACAGGCTGCGGAGTTTGTGCATTTTCGAAGATTGAAACCATGGC
AGGTCCAGAAACGGATGCCCAATTCCAGTTCACTGGTATCAAAAAATATTTCAACTCTTA
CACTCTCACAGGGAGAATGAATTGTGTGCTGGCCACATATGGAGGTATTGCTTTGCTAGT
CTTATACTTCAAGTTAAGGTCTAAAAAAACTCCAGCTGTGAAAGCAACATAAATGGATTC
TAAACTGTACCTCATCTGTTAAGTTCCCATGCCTGAAGAAGCTAATGTCAACTCATCATG
TGATAGTCAATTTATACAATAAATTATGAATCTGGAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAAGGCCCGTTGAACGCGTGCGGGGAGGAGGTTTCTTCCGGCCGGAGCGAGGGGGCAACT
GGATACGTTGAAGGACACAGGCTGCGGAGTTTGTGCATTTTCGAAGATTGAAACCATGGC
AGGTCCAGAAACGGATGCCCAATTCCAGTTCACTGGTATCAAAAAATATTTCAACTCTTA
CACTCTCACAGGGAGAATGAATTGTGTGCTGGCCACATATGGAGGTATTGCTTTGCTAGT
CTTATACTTCAAGTTAAGGTCTAAAAAAACTCCAGCTGTGAAAGCAACATAAATGGATTC
TAAACTGTACCTCATCTGTTAAGTTCCCATGCCTGAAGAAGCTAATGTCAACTCATCATG
TGATAGTCAATTTATACAATAAATTATGAATCTGGAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|19424210|ref|NP_598228.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|19424210|ref|NP_598228.1|

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               52-215, gnl|bosTau2|chr15 (52720775-52720614)
               

               
               52-215, gnl|Mm7|chr8 (71054153-71054309)
               


               
               230-407, gnl|bosTau2|chr15 (52720378-52720214)
               

               
               230-407, gnl|Mm7|chr8 (71054343-71054505)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               52-215, gnl|bosTau2|chr15 (52720775-52720614)
               

               
               52-215, gnl|Mm7|chr8 (71054153-71054309)
               


               
               230-407, gnl|bosTau2|chr15 (52720378-52720214)
               

               
               230-407, gnl|Mm7|chr8 (71054343-71054505)

Expressed library(ies): 43 entry(ies)

More info

Expressed library(ies): 43 entry(ies)

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               nms (1.28315)
               

               
               amn (0.835422)
               

               
               sto (0.719295)
               

               
               bfe (0.599431)
               

               
               jej (0.593531)
               

               
               fty (0.527519)
               

               
               cje (0.495704)
               

               
               cbe (0.478469)
               

               
               fcc (0.39557)
               

               
               nlu (0.383362)
               

               
               eru (0.360144)
               

               
               ton (0.351)
               

               
               fhi (0.339155)
               

               
               nje (0.33184)
               

               
               cki (0.330469)
               

               
               nco (0.323468)
               

               
               cte (0.29274)
               

               
               pty (0.285429)
               

               
               lnt (0.284616)
               

               
               csk (0.281492)
               

               
               che (0.272628)
               

               
               ute (0.265569)
               

               
               ese (0.253004)
               

               
               ebs (0.236602)
               

               
               ece (0.229305)
               

               
               jca (0.22792)
               

               
               nbm (0.198649)
               

               
               eje (0.197668)
               

               
               col (0.195008)
               

               
               sag (0.182715)
               

               
               fbs (0.175346)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               cut (0.169924)
               

               
               cag (0.151194)
               

               
               isp (0.150376)
               

               
               hyp (0.142837)
               

               
               cst (0.140036)
               

               
               hlv (0.139256)
               

               
               nca (0.136874)
               

               
               kid (0.129735)
               

               
               bla (0.124347)
               

               
               spc (0.113366)

Expressed library(ies): 43 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nms (1.28315)
               

               
               amn (0.835422)
               

               
               sto (0.719295)
               

               
               bfe (0.599431)
               

               
               jej (0.593531)
               

               
               fty (0.527519)
               

               
               cje (0.495704)
               

               
               cbe (0.478469)
               

               
               fcc (0.39557)
               

               
               nlu (0.383362)
               

               
               eru (0.360144)
               

               
               ton (0.351)
               

               
               fhi (0.339155)
               

               
               nje (0.33184)
               

               
               cki (0.330469)
               

               
               nco (0.323468)
               

               
               cte (0.29274)
               

               
               pty (0.285429)
               

               
               lnt (0.284616)
               

               
               csk (0.281492)
               

               
               che (0.272628)
               

               
               ute (0.265569)
               

               
               ese (0.253004)
               

               
               ebs (0.236602)
               

               
               ece (0.229305)
               

               
               jca (0.22792)
               

               
               nbm (0.198649)
               

               
               eje (0.197668)
               

               
               col (0.195008)
               

               
               sag (0.182715)
               

               
               fbs (0.175346)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               cut (0.169924)
               

               
               cag (0.151194)
               

               
               isp (0.150376)
               

               
               hyp (0.142837)
               

               
               cst (0.140036)
               

               
               hlv (0.139256)
               

               
               nca (0.136874)
               

               
               kid (0.129735)
               

               
               bla (0.124347)
               

               
               spc (0.113366)

	52-215, gnl\|bosTau2\|chr15 (52720775-52720614)
	52-215, gnl\|Mm7\|chr8 (71054153-71054309)

	230-407, gnl\|bosTau2\|chr15 (52720378-52720214)
	230-407, gnl\|Mm7\|chr8 (71054343-71054505)

	nms (1.28315)
	amn (0.835422)
	sto (0.719295)
	bfe (0.599431)
	jej (0.593531)
	fty (0.527519)
	cje (0.495704)
	cbe (0.478469)
	fcc (0.39557)
	nlu (0.383362)
	eru (0.360144)
	ton (0.351)
	fhi (0.339155)
	nje (0.33184)
	cki (0.330469)
	nco (0.323468)
	cte (0.29274)
	pty (0.285429)
	lnt (0.284616)
	csk (0.281492)
	che (0.272628)
	ute (0.265569)
	ese (0.253004)
	ebs (0.236602)
	ece (0.229305)
	jca (0.22792)
	nbm (0.198649)
	eje (0.197668)
	col (0.195008)
	sag (0.182715)
	fbs (0.175346)
	mcp (0.170648)
	eye (0.170503)
	cut (0.169924)
	cag (0.151194)
	isp (0.150376)
	hyp (0.142837)
	cst (0.140036)
	hlv (0.139256)
	nca (0.136874)
	kid (0.129735)
	bla (0.124347)
	spc (0.113366)