Non-Coding RNA Search

Ss1.1-rsto219_c13.5

Sequence:


               
               CCAATGGAGAGGAGGGGAAGGGCCAAGGAAAGAGAGTGAATAAGACTCTCGAAGAGGCTG
CTTTAGTCTGGACTGGTGAGGTGATGGATGTCATCAATCTCAGGAATGCTATTATTCAGA
GCCTGTGAGCTACTACTTTGCATCTCTACTGAATAAAAAAATCTGGAAAAAGTGAGATGA
AAAAAAAAAAAAAAAGGGGGCGCCTTTTTAAATTTTCCTTAGGGGGCCCAATTTTTCCCC
TTCCCTATTTTTTTTGAAAAAAGGGGCCCTTTTGAGAATTCTTTTTAAAACCTGGCCCCT
GCCCGTTTTTTTACACCCTTGTGATGGAAAAAACTCTTTCACACCATCGCCACTTTGTCC
AAAGAGGATTATTACCATATATTAGGAGTACCCCGAAGTGCCAGCCATAAAGACATCAAG
AAGGCCTATTACCAGCTTGCCAAGAAGTATCACCCAGACACGAATAAGGATGACCCCAAA
GCCAAGGAGAATTTCTCCCAGCTGGCCGAGGCCTAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCAATGGAGAGGAGGGGAAGGGCCAAGGAAAGAGAGTGAATAAGACTCTCGAAGAGGCTG
CTTTAGTCTGGACTGGTGAGGTGATGGATGTCATCAATCTCAGGAATGCTATTATTCAGA
GCCTGTGAGCTACTACTTTGCATCTCTACTGAATAAAAAAATCTGGAAAAAGTGAGATGA
AAAAAAAAAAAAAAAGGGGGCGCCTTTTTAAATTTTCCTTAGGGGGCCCAATTTTTCCCC
TTCCCTATTTTTTTTGAAAAAAGGGGCCCTTTTGAGAATTCTTTTTAAAACCTGGCCCCT
GCCCGTTTTTTTACACCCTTGTGATGGAAAAAACTCTTTCACACCATCGCCACTTTGTCC
AAAGAGGATTATTACCATATATTAGGAGTACCCCGAAGTGCCAGCCATAAAGACATCAAG
AAGGCCTATTACCAGCTTGCCAAGAAGTATCACCCAGACACGAATAAGGATGACCCCAAA
GCCAAGGAGAATTTCTCCCAGCTGGCCGAGGCCTAC

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-182, gnl|bosTau2|chr3 (7572133-7571949)
               

               
               1-182, gnl|Hg17|chr1 (158013305-158013481)
               

               
               1-182, gnl|Mm7|chr1 (171188210-171188012)
               


               
               315-447, gnl|bosTau2|chr25 (4370305-4370439)
               

               
               315-447, gnl|Hg17|chr16 (4424398-4424532)
               

               
               315-447, gnl|Mm7|chr16 (4359022-4359156)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-182, gnl|bosTau2|chr3 (7572133-7571949)
               

               
               1-182, gnl|Hg17|chr1 (158013305-158013481)
               

               
               1-182, gnl|Mm7|chr1 (171188210-171188012)
               


               
               315-447, gnl|bosTau2|chr25 (4370305-4370439)
               

               
               315-447, gnl|Hg17|chr16 (4424398-4424532)
               

               
               315-447, gnl|Mm7|chr16 (4359022-4359156)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               sto (0.179824)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sto (0.179824)

	1-182, gnl\|bosTau2\|chr3 (7572133-7571949)
	1-182, gnl\|Hg17\|chr1 (158013305-158013481)
	1-182, gnl\|Mm7\|chr1 (171188210-171188012)

	315-447, gnl\|bosTau2\|chr25 (4370305-4370439)
	315-447, gnl\|Hg17\|chr16 (4424398-4424532)
	315-447, gnl\|Mm7\|chr16 (4359022-4359156)