Ss1.1-rsto219_g3.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGAAGATGATCTCAGCCCAGATCTGGGAGACCAGAGGTGATGAGGTCTCGCAGCGCCAGC ACTTCCCCGCTTCAGCACCCTCGACCCCGTACGACTCCCCAAATCCGGGGCAGCGCGGAG CTTAGCCCAGCAGGGGCAGCCGATGGCCCCGCGGATCCTCCGCTTGAGCGCTGCACGGAG GACCCAGAAGACCAAACCCCAGATTCCCCCGGACCCTGGCTGGTGCCGAGCGAGGAACGG CTCTCGCGGGCCCTAGGGGTCCCGGGGGCAGCGCAGTTCGCCCTTGAGATGGCAGCCGGA AGGCGGAGGCACTGAGCGTGCATCAGACGGCTTACTTGGTAGTGCCCATCCCGGATGTAG CGCGCTCTGCCCATGCCTATTAGCATTGCGCGGAGAGCTTCCAGTTGGTCTGGTCTTCCA GCAGCTCAGTCGACCAGCCCGGGCTCCCCTCGCGGCGTCAGTGGTATGGCCCTCCTGGAC CGGCTCGCCCTGCACTTCTAGATTGGGGGGGGGGGAGATAATAAAATGGTTCGGTCCAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGAAGATGATCTCAGCCCAGATCTGGGAGACCAGAGGTGATGAGGTCTCGCAGCGCCAGC ACTTCCCCGCTTCAGCACCCTCGACCCCGTACGACTCCCCAAATCCGGGGCAGCGCGGAG CTTAGCCCAGCAGGGGCAGCCGATGGCCCCGCGGATCCTCCGCTTGAGCGCTGCACGGAG GACCCAGAAGACCAAACCCCAGATTCCCCCGGACCCTGGCTGGTGCCGAGCGAGGAACGG CTCTCGCGGGCCCTAGGGGTCCCGGGGGCAGCGCAGTTCGCCCTTGAGATGGCAGCCGGA AGGCGGAGGCACTGAGCGTGCATCAGACGGCTTACTTGGTAGTGCCCATCCCGGATGTAG CGCGCTCTGCCCATGCCTATTAGCATTGCGCGGAGAGCTTCCAGTTGGTCTGGTCTTCCA GCAGCTCAGTCGACCAGCCCGGGCTCCCCTCGCGGCGTCAGTGGTATGGCCCTCCTGGAC CGGCTCGCCCTGCACTTCTAGATTGGGGGGGGGGGAGATAATAAAATGGTTCGGTCCAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 141-260, - strand, RNAz p=0.703871 | |
| 160-276, + strand, RNAz p=0.624845 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 141-260, - strand, RNAz p=0.703871 | |
| 160-276, + strand, RNAz p=0.624845 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 8-414, gnl|bosTau2|chrX (26088354-26087944) | |
| 8-414, gnl|echTel1|scaffold_323481 (46563-47312) | |
| 8-414, gnl|hg17|chrX (48778716-48779466) | |
| 8-414, gnl|Hg17|chrX (48778798-48779216) | |
| 8-414, gnl|loxAfr1|scaffold_77565 (310-1032) | |
| 8-414, gnl|mm7|chrX (6108425-6107642) | |
| 8-414, gnl|Mm7|chrX (6108342-6107946) | |
| 8-414, gnl|oryCun1|scaffold_194299 (5125-4379) | |
| 8-414, gnl|panTro1|chrX (50103071-50103821) | |
| 8-414, gnl|rheMac2|chrX (47019120-47019875) | |
| 8-414, gnl|rn3|chrX (26924728-26925506) | |
| 427-538, gnl|bosTau2|chrX (26087910-26087799) | |
| 427-538, gnl|echTel1|scaffold_323481 (46563-47312) | |
| 427-538, gnl|hg17|chrX (48778716-48779466) | |
| 427-538, gnl|Hg17|chrX (48779233-48779341) | |
| 427-538, gnl|loxAfr1|scaffold_77565 (310-1032) | |
| 427-538, gnl|mm7|chrX (6108425-6107642) | |
| 427-538, gnl|Mm7|chrX (6107924-6107777) | |
| 427-538, gnl|oryCun1|scaffold_194299 (5125-4379) | |
| 427-538, gnl|panTro1|chrX (50103071-50103821) | |
| 427-538, gnl|rheMac2|chrX (47019120-47019875) | |
| 427-538, gnl|rn3|chrX (26924728-26925506) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 8-414, gnl|bosTau2|chrX (26088354-26087944) | |
| 8-414, gnl|echTel1|scaffold_323481 (46563-47312) | |
| 8-414, gnl|hg17|chrX (48778716-48779466) | |
| 8-414, gnl|Hg17|chrX (48778798-48779216) | |
| 8-414, gnl|loxAfr1|scaffold_77565 (310-1032) | |
| 8-414, gnl|mm7|chrX (6108425-6107642) | |
| 8-414, gnl|Mm7|chrX (6108342-6107946) | |
| 8-414, gnl|oryCun1|scaffold_194299 (5125-4379) | |
| 8-414, gnl|panTro1|chrX (50103071-50103821) | |
| 8-414, gnl|rheMac2|chrX (47019120-47019875) | |
| 8-414, gnl|rn3|chrX (26924728-26925506) | |
| 427-538, gnl|bosTau2|chrX (26087910-26087799) | |
| 427-538, gnl|echTel1|scaffold_323481 (46563-47312) | |
| 427-538, gnl|hg17|chrX (48778716-48779466) | |
| 427-538, gnl|Hg17|chrX (48779233-48779341) | |
| 427-538, gnl|loxAfr1|scaffold_77565 (310-1032) | |
| 427-538, gnl|mm7|chrX (6108425-6107642) | |
| 427-538, gnl|Mm7|chrX (6107924-6107777) | |
| 427-538, gnl|oryCun1|scaffold_194299 (5125-4379) | |
| 427-538, gnl|panTro1|chrX (50103071-50103821) | |
| 427-538, gnl|rheMac2|chrX (47019120-47019875) | |
| 427-538, gnl|rn3|chrX (26924728-26925506) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sto (0.179824) | |
| cty (0.10408) | |
| jej (0.0989218) |