Non-Coding RNA Search

Ss1.1-rsto228_f13.5

Sequence:


               
               TCCTTCATCCCCTGGACACCTGTTCCATACTGAGCGTCGGCTCTGTGTAGAGCCCGGGCT
AGACGCTGAGGACACCACAGAGAATGGCCAGCTGCCACCCCCGTGAACCGATGTCCTGGG
GAGACAGACTATAAGCGAGCCATCTTCCCCGCTGAGTGGGTTTTAGAGTGAATTTGGTTT
TGGCTTTCTGTTTTTTGGTTTTGTTTTTACATCCCACCCCCGCCCCAGGCATAATGAGGC
ATGTCTTATTCGATGTTATGCAATGGACCTATACAAAAATTCACTCTTAGTGTCCGCCAC
AATTTTTTTTAATGCAGTATATTCACCTGTAAATAGTTTGTGTAAAATTTGACAGAAAAG
TATATTTACTACACTGTAAATACATGTGATGATATATTGTATTATTTTGCTTTTTTGTAA
AGCAGTTAGTTGCTGTACATGGATAACAAACAAAAATTTGATTATTCTCGTGTTAGTATT
GTTAACTTCTTCCTGCGACTGCGTTCCATCATTTAAAGAAAATGCTGTGTATTGTGAACT
TCCATTGTATATGATAACTTCCTCTCTTTTCCATTGGGGCCCAAACTTCGGCAGTTCCCT
TGTCTGCAGTCTTGTTACTATTGTAAGCAGTTGTACGCCAGCAGGAGAATTACTGCCCAA
CAGACAAGACCCATCGTTGCAGGGGGAAACTGTAGACATCCATTTCAGATCACTGTTGCT
CCCATCCCATTTTCCTCCCTGTGTATGTACTCCTCCCCCTTTTTTAAAGTAAAATGTAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCTTCATCCCCTGGACACCTGTTCCATACTGAGCGTCGGCTCTGTGTAGAGCCCGGGCT
AGACGCTGAGGACACCACAGAGAATGGCCAGCTGCCACCCCCGTGAACCGATGTCCTGGG
GAGACAGACTATAAGCGAGCCATCTTCCCCGCTGAGTGGGTTTTAGAGTGAATTTGGTTT
TGGCTTTCTGTTTTTTGGTTTTGTTTTTACATCCCACCCCCGCCCCAGGCATAATGAGGC
ATGTCTTATTCGATGTTATGCAATGGACCTATACAAAAATTCACTCTTAGTGTCCGCCAC
AATTTTTTTTAATGCAGTATATTCACCTGTAAATAGTTTGTGTAAAATTTGACAGAAAAG
TATATTTACTACACTGTAAATACATGTGATGATATATTGTATTATTTTGCTTTTTTGTAA
AGCAGTTAGTTGCTGTACATGGATAACAAACAAAAATTTGATTATTCTCGTGTTAGTATT
GTTAACTTCTTCCTGCGACTGCGTTCCATCATTTAAAGAAAATGCTGTGTATTGTGAACT
TCCATTGTATATGATAACTTCCTCTCTTTTCCATTGGGGCCCAAACTTCGGCAGTTCCCT
TGTCTGCAGTCTTGTTACTATTGTAAGCAGTTGTACGCCAGCAGGAGAATTACTGCCCAA
CAGACAAGACCCATCGTTGCAGGGGGAAACTGTAGACATCCATTTCAGATCACTGTTGCT
CCCATCCCATTTTCCTCCCTGTGTATGTACTCCTCCCCCTTTTTTAAAGTAAAATGTAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               337-455, - strand, RNAz p=0.944928

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               337-455, - strand, RNAz p=0.944928

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-780, gnl|bosTau2|chr19 (9859931-9860711)
               

               
               1-780, gnl|Hg17|chr17 (26728042-26728804)
               

               
               1-780, gnl|Mm7|chr11 (79662418-79663171)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-780, gnl|bosTau2|chr19 (9859931-9860711)
               

               
               1-780, gnl|Hg17|chr17 (26728042-26728804)
               

               
               1-780, gnl|Mm7|chr11 (79662418-79663171)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               cki (0.330469)
               

               
               sto (0.179824)
               

               
               ret (0.128733)
               

               
               spc (0.113366)
               

               
               jej (0.0989218)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cki (0.330469)
               

               
               sto (0.179824)
               

               
               ret (0.128733)
               

               
               spc (0.113366)
               

               
               jej (0.0989218)

	1-780, gnl\|bosTau2\|chr19 (9859931-9860711)
	1-780, gnl\|Hg17\|chr17 (26728042-26728804)
	1-780, gnl\|Mm7\|chr11 (79662418-79663171)

	cki (0.330469)
	sto (0.179824)
	ret (0.128733)
	spc (0.113366)
	jej (0.0989218)