Non-Coding RNA Search

Ss1.1-rsto233_j3.5

Sequence:


               
               AGTGATTTTCCAACTGTAAATTGATAAAATCGAATAGTTTAAAACAAACAAAAAAAACCC
CTAAAATCCTGTCCTTTTCTGCTTAGTTTGACAAGAAGTCTGATCTTTCAAAATAGGTAA
GTGACACAAAAGAAGGTTTCTGTTAAGCAACACCAAGCTGCAGTTCGACATTACTCGGTT
TTCAGTTCATTTAAATCAATGAGTGCCAGGCCCCTGGACCTCTTAACAAACACTGCCAAA
ATGTGCACAAAAGCTGAAGTAACAGGAAGTTGAGACTTCAGTTGCTTGGCTGCACCAGCT
GATATTTCCCTACAGCAAACCACGTTTGCTGCTGTCAGGACTGTTTTCATTAAAACTCTC
CCTCGGGACTGTGGCTCAACTTGGAAAAACAAAAAGACTTTTCCACGTTACTCATTTCCT
ATTGTAACAGAGCTTTTGAACACTTTCCCGGTTACGACTTGTTTCCAAACGTCTTGCTCT
GCTCATACTTTAAAAAATGTGGTGTGGGAGGGGGGCGTGCAGGGATCACAAGCCTGTTTT
ACTTCATCCACG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTGATTTTCCAACTGTAAATTGATAAAATCGAATAGTTTAAAACAAACAAAAAAAACCC
CTAAAATCCTGTCCTTTTCTGCTTAGTTTGACAAGAAGTCTGATCTTTCAAAATAGGTAA
GTGACACAAAAGAAGGTTTCTGTTAAGCAACACCAAGCTGCAGTTCGACATTACTCGGTT
TTCAGTTCATTTAAATCAATGAGTGCCAGGCCCCTGGACCTCTTAACAAACACTGCCAAA
ATGTGCACAAAAGCTGAAGTAACAGGAAGTTGAGACTTCAGTTGCTTGGCTGCACCAGCT
GATATTTCCCTACAGCAAACCACGTTTGCTGCTGTCAGGACTGTTTTCATTAAAACTCTC
CCTCGGGACTGTGGCTCAACTTGGAAAAACAAAAAGACTTTTCCACGTTACTCATTTCCT
ATTGTAACAGAGCTTTTGAACACTTTCCCGGTTACGACTTGTTTCCAAACGTCTTGCTCT
GCTCATACTTTAAAAAATGTGGTGTGGGAGGGGGGCGTGCAGGGATCACAAGCCTGTTTT
ACTTCATCCACG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               130-230, - strand, RNAz p=0.986148

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               130-230, - strand, RNAz p=0.986148

Aligned organism(s): 16 entry(ies)

More info

Aligned organism(s): 16 entry(ies)

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               1-230, gnl|bosTau2|chr24 (26632446-26632675)
               

               
               1-230, gnl|canFam2|chr7 (73083761-73084427)
               

               
               1-230, gnl|echTel1|scaffold_304619 (5815-5140)
               

               
               1-230, gnl|hg17|chr18 (3444057-3444702)
               

               
               1-230, gnl|Hg17|chr18 (3444344-3444090)
               

               
               1-230, gnl|loxAfr1|scaffold_3988 (75572-74930)
               

               
               1-230, gnl|mm7|chr17 (69127621-69126928)
               

               
               1-230, gnl|Mm7|chr17 (69127339-69127561)
               

               
               1-230, gnl|monDom2|scaffold_21 (30859353-30858703)
               

               
               1-230, gnl|oryCun1|scaffold_212348 (136677-136023)
               

               
               1-230, gnl|panTro1|chr17 (9306727-9306082)
               

               
               1-230, gnl|rheMac2|chr18 (10724413-10723786)
               

               
               1-230, gnl|rn3|chr9 (110256702-110256020)
               


               
               250-514, gnl|bosTau2|chr24 (26632673-26632936)
               

               
               250-514, gnl|Hg17|chr18 (3444092-3443827)
               

               
               250-514, gnl|Mm7|chr17 (69127559-69127853)

Aligned organism(s): 16 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-230, gnl|bosTau2|chr24 (26632446-26632675)
               

               
               1-230, gnl|canFam2|chr7 (73083761-73084427)
               

               
               1-230, gnl|echTel1|scaffold_304619 (5815-5140)
               

               
               1-230, gnl|hg17|chr18 (3444057-3444702)
               

               
               1-230, gnl|Hg17|chr18 (3444344-3444090)
               

               
               1-230, gnl|loxAfr1|scaffold_3988 (75572-74930)
               

               
               1-230, gnl|mm7|chr17 (69127621-69126928)
               

               
               1-230, gnl|Mm7|chr17 (69127339-69127561)
               

               
               1-230, gnl|monDom2|scaffold_21 (30859353-30858703)
               

               
               1-230, gnl|oryCun1|scaffold_212348 (136677-136023)
               

               
               1-230, gnl|panTro1|chr17 (9306727-9306082)
               

               
               1-230, gnl|rheMac2|chr18 (10724413-10723786)
               

               
               1-230, gnl|rn3|chr9 (110256702-110256020)
               


               
               250-514, gnl|bosTau2|chr24 (26632673-26632936)
               

               
               250-514, gnl|Hg17|chr18 (3444092-3443827)
               

               
               250-514, gnl|Mm7|chr17 (69127559-69127853)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               sto (0.179824)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sto (0.179824)

	1-230, gnl\|bosTau2\|chr24 (26632446-26632675)
	1-230, gnl\|canFam2\|chr7 (73083761-73084427)
	1-230, gnl\|echTel1\|scaffold_304619 (5815-5140)
	1-230, gnl\|hg17\|chr18 (3444057-3444702)
	1-230, gnl\|Hg17\|chr18 (3444344-3444090)
	1-230, gnl\|loxAfr1\|scaffold_3988 (75572-74930)
	1-230, gnl\|mm7\|chr17 (69127621-69126928)
	1-230, gnl\|Mm7\|chr17 (69127339-69127561)
	1-230, gnl\|monDom2\|scaffold_21 (30859353-30858703)
	1-230, gnl\|oryCun1\|scaffold_212348 (136677-136023)
	1-230, gnl\|panTro1\|chr17 (9306727-9306082)
	1-230, gnl\|rheMac2\|chr18 (10724413-10723786)
	1-230, gnl\|rn3\|chr9 (110256702-110256020)

	250-514, gnl\|bosTau2\|chr24 (26632673-26632936)
	250-514, gnl\|Hg17\|chr18 (3444092-3443827)
	250-514, gnl\|Mm7\|chr17 (69127559-69127853)