Non-Coding RNA Search

Ss1.1-rsto237_n10.5

Sequence:


               
               ATGGTGCCCCCCTTCACACACAGGAGAGCTGTTTAGGGTGTCTCTGTTTATGGGCAGTGG
GGGCATTGCCCTTGAATTCACCAGCTATTAATTTTTGCTTTTACATTTCTCCCATTTCCA
GTTTCTTTTCCACCTCCACTTTTTAAAAGCAAAAAAAAAAAAAAAAAAAAAAGTGTGGTG
GTGGAGAATAAAGACTAAAGGATCTTCTCTACCTTTTCAAAACTCCAGGGGGGAGGAGAC
CAGAGGCAGGACAGACAGACCTCTGGGTGGGGTAAGAGAGTGGTTGGGAGACTCAAGGGA
TCTCTTGGATCCTGGGATCTGTGCCATCTTGGGAAGAGTGGCATTGCCAGGTGGGTGGAT
TGGGGTCTGGACGGGGTCCCACAGGTGGTGGGGAGCCTATAGGGAGGATCTGGGTGTTCA
GGAGCCATAGGGAGTGGGGATGGTGCAGACAGTGTTGGCAAGAGGGCCAGCTCAGAGAGG
CTGGCAGCTCAGACAGGTGGTGTGGGGAGCACTGGAGTTTGCAGACCCCACTGAGGGGTT
AGGGGTCTGCTCACTCAGCAATAAACAACTGTTTCACATCAAATCCTAAATATACCACTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGGTGCCCCCCTTCACACACAGGAGAGCTGTTTAGGGTGTCTCTGTTTATGGGCAGTGG
GGGCATTGCCCTTGAATTCACCAGCTATTAATTTTTGCTTTTACATTTCTCCCATTTCCA
GTTTCTTTTCCACCTCCACTTTTTAAAAGCAAAAAAAAAAAAAAAAAAAAAAGTGTGGTG
GTGGAGAATAAAGACTAAAGGATCTTCTCTACCTTTTCAAAACTCCAGGGGGGAGGAGAC
CAGAGGCAGGACAGACAGACCTCTGGGTGGGGTAAGAGAGTGGTTGGGAGACTCAAGGGA
TCTCTTGGATCCTGGGATCTGTGCCATCTTGGGAAGAGTGGCATTGCCAGGTGGGTGGAT
TGGGGTCTGGACGGGGTCCCACAGGTGGTGGGGAGCCTATAGGGAGGATCTGGGTGTTCA
GGAGCCATAGGGAGTGGGGATGGTGCAGACAGTGTTGGCAAGAGGGCCAGCTCAGAGAGG
CTGGCAGCTCAGACAGGTGGTGTGGGGAGCACTGGAGTTTGCAGACCCCACTGAGGGGTT
AGGGGTCTGCTCACTCAGCAATAAACAACTGTTTCACATCAAATCCTAAATATACCACTA

Predicted RNA structure(s): 4 entry(ies)

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Predicted RNA structure(s): 4 entry(ies)

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               45-547, - strand, RNAz p=0.999919
               

               
               134-237, - strand, RNAz p=0.533485
               

               
               278-386, - strand, RNAz p=0.609365
               

               
               488-577, - strand, RNAz p=0.964711

Predicted RNA structure(s): 4 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               45-547, - strand, RNAz p=0.999919
               

               
               134-237, - strand, RNAz p=0.533485
               

               
               278-386, - strand, RNAz p=0.609365
               

               
               488-577, - strand, RNAz p=0.964711

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               464-562, + strand, RNAmicro p=0.987338

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               464-562, + strand, RNAmicro p=0.987338

Homologous human UTR: 3 entry(ies)

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Homologous human UTR: 3 entry(ies)

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               5' of NM_021184, -
               

               
               5' of NM_021184, -
               

               
               5' of NM_021184, -

Homologous human UTR: 3 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_021184, -
               

               
               5' of NM_021184, -
               

               
               5' of NM_021184, -

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               8-600, gnl|bosTau2|chr23 (23319712-23319121)
               

               
               8-600, gnl|canFam2|chr12 (4145306-4146175)
               

               
               8-600, gnl|echTel1|scaffold_301888 (28294-27547)
               

               
               8-600, gnl|hg17|chr6 (31733710-31734584)
               

               
               8-600, gnl|Hg17|chr6 (31734693-31734099)
               

               
               8-600, gnl|loxAfr1|scaffold_24380 (39060-39843)
               

               
               8-600, gnl|mm7|chr17 (33226397-33225501)
               

               
               8-600, gnl|Mm7|chr17 (33225232-33225938)
               

               
               8-600, gnl|monDom2|scaffold_42 (17808113-17807285)
               

               
               8-600, gnl|oryCun1|scaffold_198577 (24251-25038)
               

               
               8-600, gnl|panTro1|chr5 (32133025-32133899)
               

               
               8-600, gnl|rheMac2|chr4 (31302000-31302859)
               

               
               8-600, gnl|rn3|chr20 (3757176-3758030)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               8-600, gnl|bosTau2|chr23 (23319712-23319121)
               

               
               8-600, gnl|canFam2|chr12 (4145306-4146175)
               

               
               8-600, gnl|echTel1|scaffold_301888 (28294-27547)
               

               
               8-600, gnl|hg17|chr6 (31733710-31734584)
               

               
               8-600, gnl|Hg17|chr6 (31734693-31734099)
               

               
               8-600, gnl|loxAfr1|scaffold_24380 (39060-39843)
               

               
               8-600, gnl|mm7|chr17 (33226397-33225501)
               

               
               8-600, gnl|Mm7|chr17 (33225232-33225938)
               

               
               8-600, gnl|monDom2|scaffold_42 (17808113-17807285)
               

               
               8-600, gnl|oryCun1|scaffold_198577 (24251-25038)
               

               
               8-600, gnl|panTro1|chr5 (32133025-32133899)
               

               
               8-600, gnl|rheMac2|chr4 (31302000-31302859)
               

               
               8-600, gnl|rn3|chr20 (3757176-3758030)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               mas (0.210305)
               

               
               col (0.195008)
               

               
               nep (0.183925)
               

               
               sto (0.179824)
               

               
               ill (0.175593)
               

               
               cag (0.151194)
               

               
               pty (0.142714)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mas (0.210305)
               

               
               col (0.195008)
               

               
               nep (0.183925)
               

               
               sto (0.179824)
               

               
               ill (0.175593)
               

               
               cag (0.151194)
               

               
               pty (0.142714)

	45-547, - strand, RNAz p=0.999919
	134-237, - strand, RNAz p=0.533485
	278-386, - strand, RNAz p=0.609365
	488-577, - strand, RNAz p=0.964711

	8-600, gnl\|bosTau2\|chr23 (23319712-23319121)
	8-600, gnl\|canFam2\|chr12 (4145306-4146175)
	8-600, gnl\|echTel1\|scaffold_301888 (28294-27547)
	8-600, gnl\|hg17\|chr6 (31733710-31734584)
	8-600, gnl\|Hg17\|chr6 (31734693-31734099)
	8-600, gnl\|loxAfr1\|scaffold_24380 (39060-39843)
	8-600, gnl\|mm7\|chr17 (33226397-33225501)
	8-600, gnl\|Mm7\|chr17 (33225232-33225938)
	8-600, gnl\|monDom2\|scaffold_42 (17808113-17807285)
	8-600, gnl\|oryCun1\|scaffold_198577 (24251-25038)
	8-600, gnl\|panTro1\|chr5 (32133025-32133899)
	8-600, gnl\|rheMac2\|chr4 (31302000-31302859)
	8-600, gnl\|rn3\|chr20 (3757176-3758030)

	mas (0.210305)
	col (0.195008)
	nep (0.183925)
	sto (0.179824)
	ill (0.175593)
	cag (0.151194)
	pty (0.142714)