Non-Coding RNA Search

Ss1.1-rsug01_k14.5

Sequence:


               
               TTGGGATGAAGCATTGCTAATTATAATTTAGGATTAGATCACAAGGAACTTGAAAGCCAT
ATTAAACCAGTGGATAAAACTATGAACATTCAGTTTTGCTGTCCAGTTTCCCAATATATT
CATTCCTAAAGTGAGACTTCTCTGTCCTCTGGGACTTACCACTTTCCCACAGCACACTTT
CTCCCAAAGCAGCACTCTTTCCCATGAGCCCATTGTCTATAACTGAGGCACTTACAATTT
CACCTTGTGTTTGTTTCTATACAGGTTCTGTCTTTCTTTCTGGAATATAAGCTCCATAAG
AACGAAGCCCCATTTGTTAACTTTGAAAGCTCCCAGTGGGATGGCCAGGAATAGTTGTCT
ACTAATTGTCAATTTTATGGAGTTAGTATTTAATAACATTATCCCTTGTAGTAAGAAAAC
TTAAAGTTATTTTTTGTAGAATTTGGATTATTTGTGAGAAGACTTTCATTAGTGAAAAAT
GCAAAGCAATAAGATCTTTGATTGAAATACAGCTTTATAGGTAACTATAAAGTGGCAGAC
AGCCACTGGCTGAAGTAAGGAATAGAGCCCTCTGTTAGGGGTTGAATTGTGTGCTCCAGA
GAAATGTGTTGAAGTCCTGTGAATGTGACCTTATTTGGAAATAAAGTCTTTGCAGATGTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGGGATGAAGCATTGCTAATTATAATTTAGGATTAGATCACAAGGAACTTGAAAGCCAT
ATTAAACCAGTGGATAAAACTATGAACATTCAGTTTTGCTGTCCAGTTTCCCAATATATT
CATTCCTAAAGTGAGACTTCTCTGTCCTCTGGGACTTACCACTTTCCCACAGCACACTTT
CTCCCAAAGCAGCACTCTTTCCCATGAGCCCATTGTCTATAACTGAGGCACTTACAATTT
CACCTTGTGTTTGTTTCTATACAGGTTCTGTCTTTCTTTCTGGAATATAAGCTCCATAAG
AACGAAGCCCCATTTGTTAACTTTGAAAGCTCCCAGTGGGATGGCCAGGAATAGTTGTCT
ACTAATTGTCAATTTTATGGAGTTAGTATTTAATAACATTATCCCTTGTAGTAAGAAAAC
TTAAAGTTATTTTTTGTAGAATTTGGATTATTTGTGAGAAGACTTTCATTAGTGAAAAAT
GCAAAGCAATAAGATCTTTGATTGAAATACAGCTTTATAGGTAACTATAAAGTGGCAGAC
AGCCACTGGCTGAAGTAAGGAATAGAGCCCTCTGTTAGGGGTTGAATTGTGTGCTCCAGA
GAAATGTGTTGAAGTCCTGTGAATGTGACCTTATTTGGAAATAAAGTCTTTGCAGATGTC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               440-598, - strand, RNAz p=0.549883

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               440-598, - strand, RNAz p=0.549883

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               104-637, gnl|bosTau2|chr10 (48113728-48113208)
               

               
               104-637, gnl|Hg17|chr14 (57772140-57772659)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               104-637, gnl|bosTau2|chr10 (48113728-48113208)
               

               
               104-637, gnl|Hg17|chr14 (57772140-57772659)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               ret (0.128733)
               

               
               sug (0.127291)
               

               
               spc (0.113366)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               spc (0.113366)

	104-637, gnl\|bosTau2\|chr10 (48113728-48113208)
	104-637, gnl\|Hg17\|chr14 (57772140-57772659)