Non-Coding RNA Search

Ss1.1-rsug01_m2.5

Sequence:


               
               TTGACTTCCGAGTGAAGCAAATACTTTAACAAGACGCAGTCCCCATAACCTGCAACCCCA
AAGTCAAAAACTAGAAGGCCCAGGGATTCCAGGCCGGGGATACGGATGAATGAGGTCTGA
CGTAGTGTGTCGGTGATAGACAATTAGAGGAAATCCATTACTGTCTTATTTTGTTGATAA
TATTGGAATTCAGACTGAATGATGACCACCTGACTGGCTAATTCAGGGAATATATATTTT
TCTATGAAAGCTATGAATGTGACTATCACAACCTTTTCTCATTTTTACCTTCACGTAGCA
GCATTTACAGAGATGCCAAAATGTGCCTCATTATGAGGCAGGTATACGTTTTCATCAGTC
AGAAAACACAAAGTCTAGACTAAGATCAAAACGGTCGTATTTTTAGATGATACAGTCACA
CCCTCTTAAGTTTCTCGACAGCACCTTAAAAGAGCTTTATGAATACTTTTGAGCAAATTA
ATCACAGTCTCATCACAACAATGGCAGCGTGTCTGGACTCTCTCACTGTGGCCTTCACGA
GCTTTAGGAAATCTGGTCTTGCTACTATAAAGAACTTCTTCGCAACGAGGTTTAATTTGT
TGTTAATAGGTATTTGTTGAAATTAAAGTCACCACACTTAAGTGAACGCACTGTCAAATA
TTTTTAATTCAGTAACATGCTATTGGAAAAAATGATTGTTAGAAACAAGTTGTTTTTCCA
TTTAAAAATATCTGTGAATATTAATATATGATTTGCATGTGTAAATCTGAAAAATTAAAA
TATAGAAACTTAAGGTTTCTATTCCTTTTTCATTAAAAGACTAATGTAATGAATATTTTT
TGGTTATACAGATCAAACAAGTGTCTTGATTACTTGAGAAATTTGTTTGTGGTTGCATGT
CTGCTTAAAAAAAGGCTTTTTGTTGTCATTTTCTTTTTCTTAGCCTAAGCCAGAATATTT
CTAACCTGCGGAGTCTGTGTTCTTTGCTCTGTTTATAGTATATTTTCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGACTTCCGAGTGAAGCAAATACTTTAACAAGACGCAGTCCCCATAACCTGCAACCCCA
AAGTCAAAAACTAGAAGGCCCAGGGATTCCAGGCCGGGGATACGGATGAATGAGGTCTGA
CGTAGTGTGTCGGTGATAGACAATTAGAGGAAATCCATTACTGTCTTATTTTGTTGATAA
TATTGGAATTCAGACTGAATGATGACCACCTGACTGGCTAATTCAGGGAATATATATTTT
TCTATGAAAGCTATGAATGTGACTATCACAACCTTTTCTCATTTTTACCTTCACGTAGCA
GCATTTACAGAGATGCCAAAATGTGCCTCATTATGAGGCAGGTATACGTTTTCATCAGTC
AGAAAACACAAAGTCTAGACTAAGATCAAAACGGTCGTATTTTTAGATGATACAGTCACA
CCCTCTTAAGTTTCTCGACAGCACCTTAAAAGAGCTTTATGAATACTTTTGAGCAAATTA
ATCACAGTCTCATCACAACAATGGCAGCGTGTCTGGACTCTCTCACTGTGGCCTTCACGA
GCTTTAGGAAATCTGGTCTTGCTACTATAAAGAACTTCTTCGCAACGAGGTTTAATTTGT
TGTTAATAGGTATTTGTTGAAATTAAAGTCACCACACTTAAGTGAACGCACTGTCAAATA
TTTTTAATTCAGTAACATGCTATTGGAAAAAATGATTGTTAGAAACAAGTTGTTTTTCCA
TTTAAAAATATCTGTGAATATTAATATATGATTTGCATGTGTAAATCTGAAAAATTAAAA
TATAGAAACTTAAGGTTTCTATTCCTTTTTCATTAAAAGACTAATGTAATGAATATTTTT
TGGTTATACAGATCAAACAAGTGTCTTGATTACTTGAGAAATTTGTTTGTGGTTGCATGT
CTGCTTAAAAAAAGGCTTTTTGTTGTCATTTTCTTTTTCTTAGCCTAAGCCAGAATATTT
CTAACCTGCGGAGTCTGTGTTCTTTGCTCTGTTTATAGTATATTTTCA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               234-392, - strand, RNAz p=0.889343

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               234-392, - strand, RNAz p=0.889343

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-954, gnl|bosTau2|chr1 (89276822-89277732)
               

               
               3-954, gnl|Hg17|chr21 (39480332-39479391)
               

               
               3-954, gnl|Mm7|chr16 (96329721-96328946)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-954, gnl|bosTau2|chr1 (89276822-89277732)
               

               
               3-954, gnl|Hg17|chr21 (39480332-39479391)
               

               
               3-954, gnl|Mm7|chr16 (96329721-96328946)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               fce (0.271592)
               

               
               ret (0.257467)
               

               
               sug (0.254582)
               

               
               thg (0.253582)
               

               
               gul (0.177588)
               

               
               sin (0.174948)
               

               
               spl (0.143184)
               

               
               lyg (0.133103)
               

               
               bla (0.124347)
               

               
               pgl (0.118483)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               ret (0.257467)
               

               
               sug (0.254582)
               

               
               thg (0.253582)
               

               
               gul (0.177588)
               

               
               sin (0.174948)
               

               
               spl (0.143184)
               

               
               lyg (0.133103)
               

               
               bla (0.124347)
               

               
               pgl (0.118483)

	3-954, gnl\|bosTau2\|chr1 (89276822-89277732)
	3-954, gnl\|Hg17\|chr21 (39480332-39479391)
	3-954, gnl\|Mm7\|chr16 (96329721-96328946)

	fce (0.271592)
	ret (0.257467)
	sug (0.254582)
	thg (0.253582)
	gul (0.177588)
	sin (0.174948)
	spl (0.143184)
	lyg (0.133103)
	bla (0.124347)
	pgl (0.118483)