Ss1.1-rsug01_o20.5
|
AAAGGACTTATGATATTAGAATTACCCAAAAGATGGGGGAAGAATTCTGAATTTGAAGGT
GGAAAATCAACAGTGAATTGTAGTACCACTCCAATTGCTGAGAGATTTTTCACCAGTTCT
ACCTCCCTGACTCTAAAGCATGCTGCCTGGTATCCGAGTGAAATGATGGATCCCCACATA
GTGCTGCTCACATCAGACAATGTAATAAGAATTTACTCTCTACGTGAGCCCCAGACACCC
ACTAAGGTCATTGTACTTTCAGAAGCAGAAGAGGAAAGTCTAATACTCAACAAAGGAAGG
GCCTACACCGCATCTCTAGGAGAGACAGCAGTTGCATTTGACTTTGGGCCATTGTCAGCA
GTGCCGAAGAACGTATTTGGCCAAAAAGGCAAAGATGAAGTAGTGGCATACCCCCTATAC
ATCTTACGTGAGAACGGGGAGACATTCCTTATGTATGTGAGTCTGGTGCACAGCCCTGGG
AGTGTGGGGAAGCTGTTAGGCCCATTGCCAATGCATCCTGCAGCTGAAGATAACTATGGT
TATGATGCTTGTGCCATACTCTGCTTGCCATGTGTCCCCAACATCTTGGTGATCGCTACT
GAATCGGGAATGCTGTATCACTGCGTTGTGCTGGAAGGGGAAGAAGAAGATGACCAAACC
TCAGAAAAGTCCTGGGATTCCAAGGCAGACCTCATTCCTTCTCTATATGTGTTCGAGTGT
GTGGAGCTGGAGCTCGCCCTGAAACTGGCATCCGGAGAGGATGACCCCTTTGATTCCGAC
TTTTCTTGTCCAATCAAACTTCACAGAGATCCCAAGTGTCCCTCAAGATATCACTGTACT
CATGAAGCTGGTGTACATAGTGTTGGGCTAACCTGGATTCATAAACTTCACAAATTTCTT
GGATCAGATGAAGAAGATAAGGACAGCTTGCAGGAACTAGCTACCGAACAGAAGTGCTTT
GTAGAGCATATCCTCTGTACGAAGCCATTGCCATGCAGGGAGCCAGCTCCGATTCGAGGA
TTCTGGATTGTTCCCGACATTCTGGGGCCGACGATGATCTGCATCACCAGTAACTACGAG
TGCCTCACAAGGCCCCTGCTAAGCACAGTCCATTCAGCGTCTCCTCCCCTGCTTTGTACC
CGAGATGATGTGGAGGTTGCAGAGTCTCCCCTCCGCATTCTGGCTGAAACCCCGGATTCT
TTTGAAAAACATATTAGAAGCATTTTGCAACGTAGTGTTGCAAATCCAGCATTTCTGAAA
TCGTCTGAGAAAGATACGGCTCCTCCTCCTGAAGAATGTCTTCAGCTCATCAGCAGAGCC
ACCCAGGTGTTCAGGGAACAGTACATTCTTAAGCAGGACCTGGCGAAGGAGGAGATTCAG
CGGAGGGTCAAACTGTTATGTGACCAAAAAAGGAAACAACTCGAAGATCTCAGTTATTGT
CGAGAGGAGAGGAAAAGTCTACGGGAAATGGCTGAGCGCTTAGCTGACAAATACGAGGAA
GCCAAAGAGAAACAAGAAGATATCATGAACAGGATGAAGAAAGTACTTCACAGTTTTCAC
TCTCAGCTCCCAGTTCTCTCTGACAGTGAGAGAGACATGAAGAAAGAATTACAGCTGATA
CCTGATCAACTTCGGCATTTGGGCAATGCCATCCGACAGGTTACCATGAAAAAAGACTAT
CAACAACGAAAGATGGAAAAGGTACTAAGTCCTCAAAAGCCCACCATCACTCTCAGTGCC
TACCAGCGGAAGTGCATCCAGTCCATCCTAAAGGAGGAGGGTGAGCACATAAGAGAAATG
GTGAAGCAAATCAACGACATCCGAAATCATGTAAACTTCTGATGCCACCAGGAACAGGTT
CATCCCTGCAGTTAACACAAGTGAAGGCTTAAACTCAGTGTAAGATGAAAAGCAGCATTA
TCTAATTTATAAAGACACATTTTGGATGAGCTTTGGTGTGGGTGTTCATCACTTTTTATA
CTCATTTTATAATTATTGAATAAATGCTTTTATTTAAAAAAAAAAAAAAAAAAAAAAAAA |
Blue-coloured subsequences are predicted RNA structures by RNAz
|
AAAGGACTTATGATATTAGAATTACCCAAAAGATGGGGGAAGAATTCTGAATTTGAAGGT
GGAAAATCAACAGTGAATTGTAGTACCACTCCAATTGCTGAGAGATTTTTCACCAGTTCT
ACCTCCCTGACTCTAAAGCATGCTGCCTGGTATCCGAGTGAAATGATGGATCCCCACATA
GTGCTGCTCACATCAGACAATGTAATAAGAATTTACTCTCTACGTGAGCCCCAGACACCC
ACTAAGGTCATTGTACTTTCAGAAGCAGAAGAGGAAAGTCTAATACTCAACAAAGGAAGG
GCCTACACCGCATCTCTAGGAGAGACAGCAGTTGCATTTGACTTTGGGCCATTGTCAGCA
GTGCCGAAGAACGTATTTGGCCAAAAAGGCAAAGATGAAGTAGTGGCATACCCCCTATAC
ATCTTACGTGAGAACGGGGAGACATTCCTTATGTATGTGAGTCTGGTGCACAGCCCTGGG
AGTGTGGGGAAGCTGTTAGGCCCATTGCCAATGCATCCTGCAGCTGAAGATAACTATGGT
TATGATGCTTGTGCCATACTCTGCTTGCCATGTGTCCCCAACATCTTGGTGATCGCTACT
GAATCGGGAATGCTGTATCACTGCGTTGTGCTGGAAGGGGAAGAAGAAGATGACCAAACC
TCAGAAAAGTCCTGGGATTCCAAGGCAGACCTCATTCCTTCTCTATATGTGTTCGAGTGT
GTGGAGCTGGAGCTCGCCCTGAAACTGGCATCCGGAGAGGATGACCCCTTTGATTCCGAC
TTTTCTTGTCCAATCAAACTTCACAGAGATCCCAAGTGTCCCTCAAGATATCACTGTACT
CATGAAGCTGGTGTACATAGTGTTGGGCTAACCTGGATTCATAAACTTCACAAATTTCTT
GGATCAGATGAAGAAGATAAGGACAGCTTGCAGGAACTAGCTACCGAACAGAAGTGCTTT
GTAGAGCATATCCTCTGTACGAAGCCATTGCCATGCAGGGAGCCAGCTCCGATTCGAGGA
TTCTGGATTGTTCCCGACATTCTGGGGCCGACGATGATCTGCATCACCAGTAACTACGAG
TGCCTCACAAGGCCCCTGCTAAGCACAGTCCATTCAGCGTCTCCTCCCCTGCTTTGTACC
CGAGATGATGTGGAGGTTGCAGAGTCTCCCCTCCGCATTCTGGCTGAAACCCCGGATTCT
TTTGAAAAACATATTAGAAGCATTTTGCAACGTAGTGTTGCAAATCCAGCATTTCTGAAA
TCGTCTGAGAAAGATACGGCTCCTCCTCCTGAAGAATGTCTTCAGCTCATCAGCAGAGCC
ACCCAGGTGTTCAGGGAACAGTACATTCTTAAGCAGGACCTGGCGAAGGAGGAGATTCAG
CGGAGGGTCAAACTGTTATGTGACCAAAAAAGGAAACAACTCGAAGATCTCAGTTATTGT
CGAGAGGAGAGGAAAAGTCTACGGGAAATGGCTGAGCGCTTAGCTGACAAATACGAGGAA
GCCAAAGAGAAACAAGAAGATATCATGAACAGGATGAAGAAAGTACTTCACAGTTTTCAC
TCTCAGCTCCCAGTTCTCTCTGACAGTGAGAGAGACATGAAGAAAGAATTACAGCTGATA
CCTGATCAACTTCGGCATTTGGGCAATGCCATCCGACAGGTTACCATGAAAAAAGACTAT
CAACAACGAAAGATGGAAAAGGTACTAAGTCCTCAAAAGCCCACCATCACTCTCAGTGCC
TACCAGCGGAAGTGCATCCAGTCCATCCTAAAGGAGGAGGGTGAGCACATAAGAGAAATG
GTGAAGCAAATCAACGACATCCGAAATCATGTAAACTTCTGATGCCACCAGGAACAGGTT
CATCCCTGCAGTTAACACAAGTGAAGGCTTAAACTCAGTGTAAGATGAAAAGCAGCATTA
TCTAATTTATAAAGACACATTTTGGATGAGCTTTGGTGTGGGTGTTCATCACTTTTTATA
CTCATTTTATAATTATTGAATAAATGCTTTTATTTAAAAAAAAAAAAAAAAAAAAAAAAA |
|
gi|45758484|gb|AAS76548.1| |
Protein identifier
|
gi|45758484|gb|AAS76548.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
1-282, gnl|bosTau2|chr11 (61775658-61775372) |
|
1-282, gnl|Hg17|chr17 (5260639-5254761) |
| |
|
453-813, gnl|bosTau2|chr11 (61775157-61774796) |
|
453-813, gnl|Hg17|chr17 (5252818-5248143) |
| |
|
957-1163, gnl|bosTau2|chr11 (61774778-61774576) |
|
957-1163, gnl|Hg17|chr17 (5235709-5232942) |
|
957-1163, gnl|Mm7|chr10 (25586879-25587230) |
| |
|
1183-1808, gnl|bosTau2|chr11 (61774580-61773981) |
|
1183-1808, gnl|Mm7|chr12 (8220099-8220627) |
| |
|
1923-2027, gnl|bosTau2|chr19 (15148599-15148495) |
|
1923-2027, gnl|Hg17|chr17 (5230170-5230053) |
|
1923-2027, gnl|Mm7|chr11 (71024777-71024652) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-282, gnl|bosTau2|chr11 (61775658-61775372) |
|
1-282, gnl|Hg17|chr17 (5260639-5254761) |
| |
|
453-813, gnl|bosTau2|chr11 (61775157-61774796) |
|
453-813, gnl|Hg17|chr17 (5252818-5248143) |
| |
|
957-1163, gnl|bosTau2|chr11 (61774778-61774576) |
|
957-1163, gnl|Hg17|chr17 (5235709-5232942) |
|
957-1163, gnl|Mm7|chr10 (25586879-25587230) |
| |
|
1183-1808, gnl|bosTau2|chr11 (61774580-61773981) |
|
1183-1808, gnl|Mm7|chr12 (8220099-8220627) |
| |
|
1923-2027, gnl|bosTau2|chr19 (15148599-15148495) |
|
1923-2027, gnl|Hg17|chr17 (5230170-5230053) |
|
1923-2027, gnl|Mm7|chr11 (71024777-71024652) |
|
gul (0.532765) |
|
sug (0.381874) |
|
fhi (0.339155) |
|
fat (0.294855) |
|
fce (0.271592) |
|
thg (0.253582) |
|
clu (0.239292) |
|
cbe (0.239234) |
|
jca (0.22792) |
|
cty (0.20816) |
|
hea (0.204499) |
|
ldo (0.194005) |
|
nlu (0.191681) |
|
nje (0.16592) |
|
bfe (0.149858) |
|
ski (0.146735) |
|
spl (0.143184) |
|
pty (0.142714) |
|
lnt (0.142308) |
|
ova (0.129132) |
|
ese (0.126502) |
|
bla (0.124347) |
|
pgl (0.118483) |
|
med (0.116252) |
|
spc (0.113366) |
|
gul (0.532765) |
|
sug (0.381874) |
|
fhi (0.339155) |
|
fat (0.294855) |
|
fce (0.271592) |
|
thg (0.253582) |
|
clu (0.239292) |
|
cbe (0.239234) |
|
jca (0.22792) |
|
cty (0.20816) |
|
hea (0.204499) |
|
ldo (0.194005) |
|
nlu (0.191681) |
|
nje (0.16592) |
|
bfe (0.149858) |
|
ski (0.146735) |
|
spl (0.143184) |
|
pty (0.142714) |
|
lnt (0.142308) |
|
ova (0.129132) |
|
ese (0.126502) |
|
bla (0.124347) |
|
pgl (0.118483) |
|
med (0.116252) |
|
spc (0.113366) |
