Non-Coding RNA Search

Ss1.1-rsug02_i24.5

Sequence:


               
               TAGCTCCGTTTTCAAGTCACAGATTGTTTTCAAGTTGTAGTGAGCCGTTGCATGACTTTG
AGACCTGTTTTGCATGCACAGGCAAAAAAAGAAAAAGAAGGAAGAAGCAGCAAATGCCAA
ATTATTGGAAGCTGAGAAACGAATAAAGGAAAAAGAAATGAGAAGACAACAAGCTGTTCT
TCTAAAGCATCAGGAGCGAGAGAGAAGGCGACAACATATGATGCTTATGAAAGCTATGGA
AGCTCGTAAAAAAGCAGAAGAAAAAGAACGTTTGAAGCAAGAAAAACGTGATGAGAAAAG
ATTAAATAAAGAGCGTAAACTAGAGCAACGAAGGTTAGAATTAGAAATGGCGAAGGAGCT
AAAGAAGCCTAATGAAGACATGTGCTTAGCAGACCAAAAGCCTTTGCCAGAGTTGCCCCG
TATTCCAGGACTTGTTCTCTCTGGAAGTACATTTTCAGACTGTCTCATGGTGGTGCAGTT
CTTACGAAACTTTGGTAAAGTTTTGGGCTTTGATGTGAATATTGATGTTCCAAACCTGAG
TGTTCTTCAAGAGGGATTGCTAAATATAGGGGACAGCATGGGTGAAGTACAAGACTTGCT
TGTGAGGCTCCTCTCAGCTGCTGTATGTGATCCAGGTCTAATTACAGGATACAAGGCCAA
AACAGCTCTTGGAGAACATCTGCTAAATGTTGGTGTGAATCGAGACAATGTTTCCGAGAT
TTTGCAGATTTTTATGGAAGCACACTGTGGGCAAACTGAGCTTACAGAAAGCCTGAAGAC
CAAGGCTTTTCAGGCTCACACTCCAGCACAGAAAGCCTCAGTTCTGGCTTTCCTGATCAA
TGAACTGGCATGCAGCAAGAGTGTGGTGAGTGAAATCGACAAGAATATTGATTATATGTC
AAACTTGAGGAGAGATAAATGGGTTGTAGAAGGTAAACTCCGCAAGCTCAGAATCATTCA
TGCAAAGAAAACAGGTAAAAGAGACACTTCAAGTGGCATTGATCTTGGAGAAGAACAGCA
TCCTTTGGGCACACCCACTCCAGGACGCAAGCGTAGAAGGAAGGGAGGAGATAGTGATTA
TGACGATGATGATGACGATGATAGTGATGACCAAGCTGATGAAGAGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAGCTCCGTTTTCAAGTCACAGATTGTTTTCAAGTTGTAGTGAGCCGTTGCATGACTTTG
AGACCTGTTTTGCATGCACAGGCAAAAAAAGAAAAAGAAGGAAGAAGCAGCAAATGCCAA
ATTATTGGAAGCTGAGAAACGAATAAAGGAAAAAGAAATGAGAAGACAACAAGCTGTTCT
TCTAAAGCATCAGGAGCGAGAGAGAAGGCGACAACATATGATGCTTATGAAAGCTATGGA
AGCTCGTAAAAAAGCAGAAGAAAAAGAACGTTTGAAGCAAGAAAAACGTGATGAGAAAAG
ATTAAATAAAGAGCGTAAACTAGAGCAACGAAGGTTAGAATTAGAAATGGCGAAGGAGCT
AAAGAAGCCTAATGAAGACATGTGCTTAGCAGACCAAAAGCCTTTGCCAGAGTTGCCCCG
TATTCCAGGACTTGTTCTCTCTGGAAGTACATTTTCAGACTGTCTCATGGTGGTGCAGTT
CTTACGAAACTTTGGTAAAGTTTTGGGCTTTGATGTGAATATTGATGTTCCAAACCTGAG
TGTTCTTCAAGAGGGATTGCTAAATATAGGGGACAGCATGGGTGAAGTACAAGACTTGCT
TGTGAGGCTCCTCTCAGCTGCTGTATGTGATCCAGGTCTAATTACAGGATACAAGGCCAA
AACAGCTCTTGGAGAACATCTGCTAAATGTTGGTGTGAATCGAGACAATGTTTCCGAGAT
TTTGCAGATTTTTATGGAAGCACACTGTGGGCAAACTGAGCTTACAGAAAGCCTGAAGAC
CAAGGCTTTTCAGGCTCACACTCCAGCACAGAAAGCCTCAGTTCTGGCTTTCCTGATCAA
TGAACTGGCATGCAGCAAGAGTGTGGTGAGTGAAATCGACAAGAATATTGATTATATGTC
AAACTTGAGGAGAGATAAATGGGTTGTAGAAGGTAAACTCCGCAAGCTCAGAATCATTCA
TGCAAAGAAAACAGGTAAAAGAGACACTTCAAGTGGCATTGATCTTGGAGAAGAACAGCA
TCCTTTGGGCACACCCACTCCAGGACGCAAGCGTAGAAGGAAGGGAGGAGATAGTGATTA
TGACGATGATGATGACGATGATAGTGATGACCAAGCTGATGAAGAGGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61868228|ref|XP_606631.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61868228|ref|XP_606631.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               399-662, gnl|bosTau2|chr2 (10624549-10624812)
               

               
               399-662, gnl|Hg17|chr2 (160068627-160068364)
               

               
               399-662, gnl|Mm7|chr2 (59855466-59855203)
               


               
               946-1128, gnl|bosTau2|chr2 (10627651-10627833)
               

               
               946-1128, gnl|Hg17|chr2 (160064820-160064638)
               

               
               946-1128, gnl|Mm7|chr2 (59851087-59850905)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               399-662, gnl|bosTau2|chr2 (10624549-10624812)
               

               
               399-662, gnl|Hg17|chr2 (160068627-160068364)
               

               
               399-662, gnl|Mm7|chr2 (59855466-59855203)
               


               
               946-1128, gnl|bosTau2|chr2 (10627651-10627833)
               

               
               946-1128, gnl|Hg17|chr2 (160064820-160064638)
               

               
               946-1128, gnl|Mm7|chr2 (59851087-59850905)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               sug (0.127291)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sug (0.127291)

	399-662, gnl\|bosTau2\|chr2 (10624549-10624812)
	399-662, gnl\|Hg17\|chr2 (160068627-160068364)
	399-662, gnl\|Mm7\|chr2 (59855466-59855203)

	946-1128, gnl\|bosTau2\|chr2 (10627651-10627833)
	946-1128, gnl\|Hg17\|chr2 (160064820-160064638)
	946-1128, gnl\|Mm7\|chr2 (59851087-59850905)