Ss1.1-rsug02_j10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCATTTCCACCGGTCTCTTGTCGGGCAGCTTGGGCTCCTGTCATCGCCGTCCCTCCGCCG CTGCCGCCCCCGCAAGGCTTCGCCGTCGTCGAAGCCACCTCCAGCGACTTGTCGCACCCG ATTCTCTGTGCTTTGTTTCCCGCCAACCGCAACCATTGACGCCATGTCGAGTTATTCAAG TGACCGAGACCGCGGCCGGGATCGAGGGTTTGGTGCGCCTCGATTTGGAGGAAGTAGGGC AGGGCCCTTATCTGGAAAGAAGTTTGGAAACCCTGGGGAGAAACTGGTTAAAAAGAAGTG GAATCTTGATGAGCTGCCCAAATTTGAGAAGAATTTTTATCAAGAACACCCTGATTTGGC TAGGCGAACAGCACAAGAGGTAGAGACATACAGAAGAAGCAAGGAAATTACAGTTAGAGG TCACAACTGCCCAAAGCCAGTTCTGAATTTTTATGAAGCAAACTTTCCTGCAAACGTAAT GGATGTGATTGCGAGGCAGAACTTTACTGAACCCACTGCTATTCAAGCTCAGGGATGGCC TGTTGCTCTAAGTGGATTGGATATGGTTGGGGTAGCACAAACTGGATCTGGGAAAACATT ATCTTATTTGCTCCCTGCTATTGTCCACATCAATCATCAGCCATTCCTAGAGAGAGGTGA TGGACCTATTTGCTTGGTGCTGGCACCAACTCGAGAACTGGCCCAACAGGTACAGCAAGT AGCTGCTGAATACTGTAGAGCGTGTCGCTTGAAGTCCACCTGCATCTACGGTGGTGCTCC TAAGGGACCACAGATACGTGATTTGGAGAGAGGTGTGGAAATCTGTATCGCGACACCTGG AAGACTGATTGACTTTTTAGAATGTGGGAAAACCAATCTAAGACGGACCACCTACCTTGT CCTTGATGAAGCAGATAGAATGCTGGATATGGGATTCGAACCCCAAATAAGGAAAATTGT GGATCAGATAAGACCTGATAGGCAAACCCTCATGTGGAGTGCTACTTGGCCAAAAGAAGT AAGACAGCTCGCTGAAGATTTCCTGAAAGACTATATTCATATAAACATTGGTGCACTAGA ACTGAGTGCAAATCACAACATTCTTCAGATTGTGGATGTGTGTCATGATGTGGAAAAGGA TGAAAAACTTATTCGCCTAATGGAAGAGATCATGAGTGAGAAGGAAAATAAAACCATTGT TTTTGTTGAAACCAAAAGAAGATGTGATGAACTTACTAGGAAAATGAGGAGAGATGGGTG GCCTGCCATGGGTATCCATGGTGACAAAAGTCAACAGGAACGTGACTGGGTTCTAAATGA ATTCAAACATGGAAAAGCTCCTATTCTGATTGCTACAGATGTGGCCTCACACCTTACAGA TGTGGAAGATGTGAAATTTGTCATCAATTATGACTACCCTAACTCCTCAGAGGATTATAT TCATCGAATTGGAAGAACTGCCCGCAGTACCAAAACAGGCACAGCATACACTTTCTTTAC ACCTAATAACATAAAGCAAGTGAGCGACCTTATCTCTGTGCTTCGTGAAGCTAATCAGGC AATTAATCCCAAGTTGCTTCAGTTGGTCGAAGACAGAGGTTCAGGTCGTTCCAGGGGTAG AGGAGGCCTGAAGGATGACCGTCGGGACAGATACTCTGCGGGCAAAAGGGGTGGATTTAA TACATTTAGAGACAGGGAAAATTATGACCGAGGTTACTCTAGTTTGCTTAAGAGAGATTT TGGAGCAAAAACTCAGAATGGTGTTTACAGTGCTGCAAATTACACCAATGGGAGCTTTGG AAGTAATTTTGTGTCTGCTGGTATACAGACCAGTTTTAGGACTGGTAATCCAACAGGGAC TTACCAGAATGGTTATGATAGCACTCAGCAATATGGAAGTAATGTTCCAAATATGCACAA TGGTATGAACCAACAGGCATATGCATATCCTGCTACTGCAGCTGCACCTATGATTGGTTA TCCGATGCCAACAGGATATTCTCAATAAGACTTTAGAAGTATATGTAAATGTCTGTTTTT CATAATTGCTCTTTATATTGTGTGTTATCAGACAAGATAGTTATTTAAGAAACATGGGAA ATGCAGAAATGACTGCAGTGCAGCAGTAATTATGGTGCACTTTTTCGCTATTTAAGTTGG ATATTTCTCTACATTCCTGAAACAATTTTTAGGTTTTTTTTGTACTAGAAAATGCAGGCA GTGTTTTCACAAAAGTAAATGTACAGTGATTTGAAATACAATAAATGAAGGCAATGCATG GCCTTCCAATAAAAAATATTTGAAGACTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCATTTCCACCGGTCTCTTGTCGGGCAGCTTGGGCTCCTGTCATCGCCGTCCCTCCGCCG CTGCCGCCCCCGCAAGGCTTCGCCGTCGTCGAAGCCACCTCCAGCGACTTGTCGCACCCG ATTCTCTGTGCTTTGTTTCCCGCCAACCGCAACCATTGACGCCATGTCGAGTTATTCAAG TGACCGAGACCGCGGCCGGGATCGAGGGTTTGGTGCGCCTCGATTTGGAGGAAGTAGGGC AGGGCCCTTATCTGGAAAGAAGTTTGGAAACCCTGGGGAGAAACTGGTTAAAAAGAAGTG GAATCTTGATGAGCTGCCCAAATTTGAGAAGAATTTTTATCAAGAACACCCTGATTTGGC TAGGCGAACAGCACAAGAGGTAGAGACATACAGAAGAAGCAAGGAAATTACAGTTAGAGG TCACAACTGCCCAAAGCCAGTTCTGAATTTTTATGAAGCAAACTTTCCTGCAAACGTAAT GGATGTGATTGCGAGGCAGAACTTTACTGAACCCACTGCTATTCAAGCTCAGGGATGGCC TGTTGCTCTAAGTGGATTGGATATGGTTGGGGTAGCACAAACTGGATCTGGGAAAACATT ATCTTATTTGCTCCCTGCTATTGTCCACATCAATCATCAGCCATTCCTAGAGAGAGGTGA TGGACCTATTTGCTTGGTGCTGGCACCAACTCGAGAACTGGCCCAACAGGTACAGCAAGT AGCTGCTGAATACTGTAGAGCGTGTCGCTTGAAGTCCACCTGCATCTACGGTGGTGCTCC TAAGGGACCACAGATACGTGATTTGGAGAGAGGTGTGGAAATCTGTATCGCGACACCTGG AAGACTGATTGACTTTTTAGAATGTGGGAAAACCAATCTAAGACGGACCACCTACCTTGT CCTTGATGAAGCAGATAGAATGCTGGATATGGGATTCGAACCCCAAATAAGGAAAATTGT GGATCAGATAAGACCTGATAGGCAAACCCTCATGTGGAGTGCTACTTGGCCAAAAGAAGT AAGACAGCTCGCTGAAGATTTCCTGAAAGACTATATTCATATAAACATTGGTGCACTAGA ACTGAGTGCAAATCACAACATTCTTCAGATTGTGGATGTGTGTCATGATGTGGAAAAGGA TGAAAAACTTATTCGCCTAATGGAAGAGATCATGAGTGAGAAGGAAAATAAAACCATTGT TTTTGTTGAAACCAAAAGAAGATGTGATGAACTTACTAGGAAAATGAGGAGAGATGGGTG GCCTGCCATGGGTATCCATGGTGACAAAAGTCAACAGGAACGTGACTGGGTTCTAAATGA ATTCAAACATGGAAAAGCTCCTATTCTGATTGCTACAGATGTGGCCTCACACCTTACAGA TGTGGAAGATGTGAAATTTGTCATCAATTATGACTACCCTAACTCCTCAGAGGATTATAT TCATCGAATTGGAAGAACTGCCCGCAGTACCAAAACAGGCACAGCATACACTTTCTTTAC ACCTAATAACATAAAGCAAGTGAGCGACCTTATCTCTGTGCTTCGTGAAGCTAATCAGGC AATTAATCCCAAGTTGCTTCAGTTGGTCGAAGACAGAGGTTCAGGTCGTTCCAGGGGTAG AGGAGGCCTGAAGGATGACCGTCGGGACAGATACTCTGCGGGCAAAAGGGGTGGATTTAA TACATTTAGAGACAGGGAAAATTATGACCGAGGTTACTCTAGTTTGCTTAAGAGAGATTT TGGAGCAAAAACTCAGAATGGTGTTTACAGTGCTGCAAATTACACCAATGGGAGCTTTGG AAGTAATTTTGTGTCTGCTGGTATACAGACCAGTTTTAGGACTGGTAATCCAACAGGGAC TTACCAGAATGGTTATGATAGCACTCAGCAATATGGAAGTAATGTTCCAAATATGCACAA TGGTATGAACCAACAGGCATATGCATATCCTGCTACTGCAGCTGCACCTATGATTGGTTA TCCGATGCCAACAGGATATTCTCAATAAGACTTTAGAAGTATATGTAAATGTCTGTTTTT CATAATTGCTCTTTATATTGTGTGTTATCAGACAAGATAGTTATTTAAGAAACATGGGAA ATGCAGAAATGACTGCAGTGCAGCAGTAATTATGGTGCACTTTTTCGCTATTTAAGTTGG ATATTTCTCTACATTCCTGAAACAATTTTTAGGTTTTTTTTGTACTAGAAAATGCAGGCA GTGTTTTCACAAAAGTAAATGTACAGTGATTTGAAATACAATAAATGAAGGCAATGCATG GCCTTCCAATAAAAAATATTTGAAGACTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 851-2206, + strand, RNAz p=0.992471 | |
| 1481-1600, - strand, RNAz p=0.789567 | |
| 1699-2014, - strand, RNAz p=0.997414 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 851-2206, + strand, RNAz p=0.992471 | |
| 1481-1600, - strand, RNAz p=0.789567 | |
| 1699-2014, - strand, RNAz p=0.997414 |
| Aligned organism(s): 28 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
| 1-209, gnl|bosTau2|chr19 (42629375-42629167) | |
| 1-209, gnl|Hg17|chr17 (59932862-59932654) | |
| 1-209, gnl|Mm7|chr11 (106897528-106897312) | |
| 461-604, gnl|bosTau2|chr19 (42627466-42627323) | |
| 461-604, gnl|canFam2|chr9 (15432853-15432995) | |
| 461-604, gnl|danRer3|chr3 (20716338-20716479) | |
| 461-604, gnl|dasNov1|scaffold_39796 (9691-9833) | |
| 461-604, gnl|echTel1|scaffold_309177 (85263-85120) | |
| 461-604, gnl|fr1|chrUn (119968971-119969113) | |
| 461-604, gnl|galGal2|chr18 (6692836-6692978) | |
| 461-604, gnl|hg17|chr17 (59930558-59930700) | |
| 461-604, gnl|Hg17|chr17 (59930714-59930563) | |
| 461-604, gnl|loxAfr1|scaffold_7204 (49926-49784) | |
| 461-604, gnl|mm7|chr11 (106895262-106895404) | |
| 461-604, gnl|Mm7|chr11 (106895405-106895267) | |
| 461-604, gnl|monDom2|scaffold_18 (16810649-16810791) | |
| 461-604, gnl|oryCun1|scaffold_104905 (1070-1212) | |
| 461-604, gnl|panTro1|chr19_random (49351454-49351596) | |
| 461-604, gnl|rheMac2|chr16 (60049403-60049545) | |
| 461-604, gnl|rn3|chr10 (96150966-96151108) | |
| 461-604, gnl|tetNig1|chrUn_random (27207544-27207402) | |
| 461-604, gnl|xenTro1|scaffold_1145 (138428-138570) | |
| 811-973, gnl|bosTau2|chr19 (42626679-42626517) | |
| 811-973, gnl|Hg17|chr17 (59929930-59929768) | |
| 811-973, gnl|Mm7|chr11 (106894339-106894177) | |
| 1086-2315, gnl|bosTau2|chr17 (30999759-31000977) | |
| 1086-2315, gnl|Hg17|chr17 (59929566-59926200) | |
| 1086-2315, gnl|Mm7|chr11 (48709545-48708362) |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-209, gnl|bosTau2|chr19 (42629375-42629167) | |
| 1-209, gnl|Hg17|chr17 (59932862-59932654) | |
| 1-209, gnl|Mm7|chr11 (106897528-106897312) | |
| 461-604, gnl|bosTau2|chr19 (42627466-42627323) | |
| 461-604, gnl|canFam2|chr9 (15432853-15432995) | |
| 461-604, gnl|danRer3|chr3 (20716338-20716479) | |
| 461-604, gnl|dasNov1|scaffold_39796 (9691-9833) | |
| 461-604, gnl|echTel1|scaffold_309177 (85263-85120) | |
| 461-604, gnl|fr1|chrUn (119968971-119969113) | |
| 461-604, gnl|galGal2|chr18 (6692836-6692978) | |
| 461-604, gnl|hg17|chr17 (59930558-59930700) | |
| 461-604, gnl|Hg17|chr17 (59930714-59930563) | |
| 461-604, gnl|loxAfr1|scaffold_7204 (49926-49784) | |
| 461-604, gnl|mm7|chr11 (106895262-106895404) | |
| 461-604, gnl|Mm7|chr11 (106895405-106895267) | |
| 461-604, gnl|monDom2|scaffold_18 (16810649-16810791) | |
| 461-604, gnl|oryCun1|scaffold_104905 (1070-1212) | |
| 461-604, gnl|panTro1|chr19_random (49351454-49351596) | |
| 461-604, gnl|rheMac2|chr16 (60049403-60049545) | |
| 461-604, gnl|rn3|chr10 (96150966-96151108) | |
| 461-604, gnl|tetNig1|chrUn_random (27207544-27207402) | |
| 461-604, gnl|xenTro1|scaffold_1145 (138428-138570) | |
| 811-973, gnl|bosTau2|chr19 (42626679-42626517) | |
| 811-973, gnl|Hg17|chr17 (59929930-59929768) | |
| 811-973, gnl|Mm7|chr11 (106894339-106894177) | |
| 1086-2315, gnl|bosTau2|chr17 (30999759-31000977) | |
| 1086-2315, gnl|Hg17|chr17 (59929566-59926200) | |
| 1086-2315, gnl|Mm7|chr11 (48709545-48708362) |
| Expressed library(ies): 78 entry(ies) | More info |
| Expressed library(ies): 78 entry(ies) | Help | Less info |
| lin (4.51369) | |
| thg (3.55015) | |
| tes (2.90939) | |
| cbl (2.75514) | |
| sug (2.41853) | |
| tra (2.33875) | |
| cbr (2.30356) | |
| sin (2.09937) | |
| lyg (1.99654) | |
| ski (1.90756) | |
| gul (1.5983) | |
| spl (1.57503) | |
| aor (1.56219) | |
| rec (1.55763) | |
| duo (1.38241) | |
| bla (1.36782) | |
| ret (1.28733) | |
| mgp (1.1534) | |
| pgl (1.06635) | |
| fty (1.05504) | |
| cty (1.0408) | |
| ova (1.03306) | |
| pro (1.02407) | |
| eye (0.852515) | |
| med (0.813764) | |
| ecc (0.805246) | |
| elu (0.770713) | |
| lun (0.752445) | |
| fat (0.737137) | |
| liv (0.731422) | |
| ste (0.676041) | |
| kid (0.648677) | |
| mga (0.64082) | |
| hea (0.613497) | |
| bfe (0.599431) | |
| lnt (0.569233) | |
| fce (0.543183) | |
| nmm (0.531209) | |
| ute (0.531138) | |
| jej (0.494609) | |
| hlv (0.417769) | |
| amn (0.417711) | |
| col (0.390016) | |
| ldo (0.38801) | |
| sag (0.36543) | |
| ebs (0.354904) | |
| jca (0.34188) | |
| spc (0.340097) | |
| vin (0.332557) | |
| nje (0.33184) | |
| csp (0.322373) | |
| isp (0.300752) | |
| nbm (0.297974) | |
| nca (0.273748) | |
| che (0.272628) | |
| pla (0.267344) | |
| ese (0.253004) | |
| eep (0.245128) | |
| clu (0.239292) | |
| pan (0.23596) | |
| ece (0.229305) | |
| nms (0.213858) | |
| fli (0.202881) | |
| nlu (0.191681) | |
| nep (0.183925) | |
| mgm (0.180343) | |
| ill (0.175593) | |
| ton (0.1755) | |
| mcp (0.170648) | |
| fhi (0.169578) | |
| fco (0.157208) | |
| tbr (0.154178) | |
| cli (0.152812) | |
| eli (0.151814) | |
| ssp (0.13552) | |
| cly (0.120642) | |
| eru (0.120048) | |
| eje (0.0988338) |
| Expressed library(ies): 78 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| lin (4.51369) | |
| thg (3.55015) | |
| tes (2.90939) | |
| cbl (2.75514) | |
| sug (2.41853) | |
| tra (2.33875) | |
| cbr (2.30356) | |
| sin (2.09937) | |
| lyg (1.99654) | |
| ski (1.90756) | |
| gul (1.5983) | |
| spl (1.57503) | |
| aor (1.56219) | |
| rec (1.55763) | |
| duo (1.38241) | |
| bla (1.36782) | |
| ret (1.28733) | |
| mgp (1.1534) | |
| pgl (1.06635) | |
| fty (1.05504) | |
| cty (1.0408) | |
| ova (1.03306) | |
| pro (1.02407) | |
| eye (0.852515) | |
| med (0.813764) | |
| ecc (0.805246) | |
| elu (0.770713) | |
| lun (0.752445) | |
| fat (0.737137) | |
| liv (0.731422) | |
| ste (0.676041) | |
| kid (0.648677) | |
| mga (0.64082) | |
| hea (0.613497) | |
| bfe (0.599431) | |
| lnt (0.569233) | |
| fce (0.543183) | |
| nmm (0.531209) | |
| ute (0.531138) | |
| jej (0.494609) | |
| hlv (0.417769) | |
| amn (0.417711) | |
| col (0.390016) | |
| ldo (0.38801) | |
| sag (0.36543) | |
| ebs (0.354904) | |
| jca (0.34188) | |
| spc (0.340097) | |
| vin (0.332557) | |
| nje (0.33184) | |
| csp (0.322373) | |
| isp (0.300752) | |
| nbm (0.297974) | |
| nca (0.273748) | |
| che (0.272628) | |
| pla (0.267344) | |
| ese (0.253004) | |
| eep (0.245128) | |
| clu (0.239292) | |
| pan (0.23596) | |
| ece (0.229305) | |
| nms (0.213858) | |
| fli (0.202881) | |
| nlu (0.191681) | |
| nep (0.183925) | |
| mgm (0.180343) | |
| ill (0.175593) | |
| ton (0.1755) | |
| mcp (0.170648) | |
| fhi (0.169578) | |
| fco (0.157208) | |
| tbr (0.154178) | |
| cli (0.152812) | |
| eli (0.151814) | |
| ssp (0.13552) | |
| cly (0.120642) | |
| eru (0.120048) | |
| eje (0.0988338) |