Ss1.1-rsug02_j17.5
Sequence: | Distiller database | More info |
Sequence: | Distiller database | Help | Less info |
AGACAAAAATTAACTGAAACAGAGCTTAAATTTGAACTTTTAGAAAAAGATCCTTATGCA CTTGATGTTCCAAATACAGCATTTGGCAGAGAGCATTCCCCATATGGTCCTTCACCATTG GGCCGACCTTCACCTGAAACGAGAGCTTTTCTCTCCCCTCCAACTTTGTTGGAGGGTCCA CTCAGACTCTCACCTTTGCTTCCAGGGGGAGGAGGAAGAGGCTCAAGAGGCCCTGGGAAT CCTCTAGACCATCCGATTACCAATGAAAGAGGAGACTCAAGCGCTGATTGGTTAATTGAT CCTCATAGAGCGCCTTCTGACACTGGGTCCCTTTCACCTCCCTGGGAACAAGATCGTAGG ATGATGATCCCGCCATCAGGCCAGCCATATCCTGATCCAGTTTTTCCTCCGCAAAGGCAA GACAGATTTTATTCTAATTCTGGTAGACTCTCTGGACCAGCAGAACTCAGAAGTTTCAAT ATGCCATCTTTGGATAAAGTGGATGGACCAGTGTCTTCCGAAATGGAATCCAATAGAACT GATGGCAAAGACGACCTTGGTAATTTAAACGTGCCTGATTCATCTCTTCCCAATGAAAGC GAAGCAACTGGCCCTGGCTTTGTTCCTCCACCTCGTCCTCCAGTCAGAGGTCCATTGTTT CCACTGGATGCAAGGGGTCCTTTCTTACGAAGAGGCCCTCCTTTTCCTCCACCTCCTCCG GGAAGCATGTATGCAGCTCCCCGAGATTATTTTCCGCCAAGGGATTTCCCTGGCCCTCCA CCTCCTCCATTTGCAATGAGAAGTGTCTATCCACCAAGAGGTTTTCCTCATTATCTGCCC CCAAGAGCTGGATTTTTCCCTCCACCCCCACATCCTGAAAGTAGAAGTGAGTTCCCAGCA GGGTTGATTCCGCCTTCAAATGAGCCTACTACTGAACACCCAGAACCACAGCAAGAAACT TGACTGTATTGTCGGTCTCTCTTTAAAAGTAATGTTGACTTCTCTCTCATTTTCAGTTTA AGTAACTGTGGTTACTTAAGTGATTATACTTTTGCTCAAATTGAAGCTCAATGGAATTTT AATTCTCAGGATAGTATTTTGTAAATAAAGATGATTTAAATATGAATCTTATGAGTAAAT TATTTGCTTTATTTTATTCTAGATAGCATAATTATTTTAATTTGATTAACACATCCACTA TGACATAAACAATAATGAGAATTTCACATATGTGATCTTGCAGTTGGGGATGTTTTAAAT TCCAAAGGCTGTGTCTTTATGCCAAGAACTGTATTTACTATGATGGTTGTAGCAAATGTG AAAGTAACTTTATGTTTAATTAAATAAATTTTAATT |
Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
AGACAAAAATTAACTGAAACAGAGCTTAAATTTGAACTTTTAGAAAAAGATCCTTATGCA CTTGATGTTCCAAATACAGCATTTGGCAGAGAGCATTCCCCATATGGTCCTTCACCATTG GGCCGACCTTCACCTGAAACGAGAGCTTTTCTCTCCCCTCCAACTTTGTTGGAGGGTCCA CTCAGACTCTCACCTTTGCTTCCAGGGGGAGGAGGAAGAGGCTCAAGAGGCCCTGGGAAT CCTCTAGACCATCCGATTACCAATGAAAGAGGAGACTCAAGCGCTGATTGGTTAATTGAT CCTCATAGAGCGCCTTCTGACACTGGGTCCCTTTCACCTCCCTGGGAACAAGATCGTAGG ATGATGATCCCGCCATCAGGCCAGCCATATCCTGATCCAGTTTTTCCTCCGCAAAGGCAA GACAGATTTTATTCTAATTCTGGTAGACTCTCTGGACCAGCAGAACTCAGAAGTTTCAAT ATGCCATCTTTGGATAAAGTGGATGGACCAGTGTCTTCCGAAATGGAATCCAATAGAACT GATGGCAAAGACGACCTTGGTAATTTAAACGTGCCTGATTCATCTCTTCCCAATGAAAGC GAAGCAACTGGCCCTGGCTTTGTTCCTCCACCTCGTCCTCCAGTCAGAGGTCCATTGTTT CCACTGGATGCAAGGGGTCCTTTCTTACGAAGAGGCCCTCCTTTTCCTCCACCTCCTCCG GGAAGCATGTATGCAGCTCCCCGAGATTATTTTCCGCCAAGGGATTTCCCTGGCCCTCCA CCTCCTCCATTTGCAATGAGAAGTGTCTATCCACCAAGAGGTTTTCCTCATTATCTGCCC CCAAGAGCTGGATTTTTCCCTCCACCCCCACATCCTGAAAGTAGAAGTGAGTTCCCAGCA GGGTTGATTCCGCCTTCAAATGAGCCTACTACTGAACACCCAGAACCACAGCAAGAAACT TGACTGTATTGTCGGTCTCTCTTTAAAAGTAATGTTGACTTCTCTCTCATTTTCAGTTTA AGTAACTGTGGTTACTTAAGTGATTATACTTTTGCTCAAATTGAAGCTCAATGGAATTTT AATTCTCAGGATAGTATTTTGTAAATAAAGATGATTTAAATATGAATCTTATGAGTAAAT TATTTGCTTTATTTTATTCTAGATAGCATAATTATTTTAATTTGATTAACACATCCACTA TGACATAAACAATAATGAGAATTTCACATATGTGATCTTGCAGTTGGGGATGTTTTAAAT TCCAAAGGCTGTGTCTTTATGCCAAGAACTGTATTTACTATGATGGTTGTAGCAAATGTG AAAGTAACTTTATGTTTAATTAAATAAATTTTAATT |
Coded protein: 1 entry(ies) | More info |
Aligned organism(s): 51 entry(ies) | More info |
Aligned organism(s): 51 entry(ies) | Help | Less info |
219-380, gnl|bosTau2|chr21 (33452207-33452046) | |
219-380, gnl|canFam2|chr8 (20472357-20472201) | |
219-380, gnl|canFam2|chr8 (20472198-20472356) | |
219-380, gnl|canFam2|chr8 (20472198-20472356) | |
219-380, gnl|canFam2|chr8 (20472357-20472201) | |
219-380, gnl|dasNov1|scaffold_20863 (36167-36291) | |
219-380, gnl|dasNov1|scaffold_20863 (36294-36168) | |
219-380, gnl|dasNov1|scaffold_20863 (36237-36168) | |
219-380, gnl|dasNov1|scaffold_20863 (36167-36235) | |
219-380, gnl|echTel1|scaffold_94935 (3638-3482) | |
219-380, gnl|echTel1|scaffold_94935 (3479-3637) | |
219-380, gnl|echTel1|scaffold_94935 (3479-3637) | |
219-380, gnl|echTel1|scaffold_94935 (3638-3482) | |
219-380, gnl|galGal2|chr5 (34507636-34507480) | |
219-380, gnl|galGal2|chr5 (34507484-34507635) | |
219-380, gnl|galGal2|chr5 (34507636-34507485) | |
219-380, gnl|hg17|chr13 (49364396-49364554) | |
219-380, gnl|Hg17|chr14 (38865817-38865978) | |
219-380, gnl|hg17|chr18 (18250037-18250193) | |
219-380, gnl|hg17|chr7 (142787425-142787583) | |
219-380, gnl|hg17|chr9 (27598966-27599121) | |
219-380, gnl|loxAfr1|scaffold_16139 (16162-16010) | |
219-380, gnl|loxAfr1|scaffold_16139 (16016-16161) | |
219-380, gnl|loxAfr1|scaffold_16139 (16007-16161) | |
219-380, gnl|loxAfr1|scaffold_16139 (16162-16010) | |
219-380, gnl|Mm7|chr12 (57114742-57114903) | |
219-380, gnl|mm7|chr2 (85000648-85000806) | |
219-380, gnl|mm7|chr2 (85000809-85000649) | |
219-380, gnl|mm7|chr2 (85000809-85000649) | |
219-380, gnl|mm7|chr2 (85000648-85000806) | |
219-380, gnl|monDom2|scaffold_8 (89148407-89148548) | |
219-380, gnl|monDom2|scaffold_8 (89148549-89148408) | |
219-380, gnl|monDom2|scaffold_8 (89148549-89148408) | |
219-380, gnl|oryCun1|scaffold_141486 (4929-4830) | |
219-380, gnl|oryCun1|scaffold_141486 (4829-4926) | |
219-380, gnl|oryCun1|scaffold_160992 (4307-4208) | |
219-380, gnl|oryCun1|scaffold_160992 (4253-4317) | |
219-380, gnl|panTro1|chr11 (28137262-28137416) | |
219-380, gnl|panTro1|chr13 (57817305-57817149) | |
219-380, gnl|panTro1|chr14_random (15422737-15422896) | |
219-380, gnl|panTro1|chr17 (14153796-14153953) | |
219-380, gnl|rheMac2|chr15 (49484002-49483846) | |
219-380, gnl|rheMac2|chr17 (28703866-28704024) | |
219-380, gnl|rheMac2|chr18 (15436948-15437104) | |
219-380, gnl|rheMac2|chr3 (181150384-181150542) | |
219-380, gnl|rn3|chr6 (79881787-79881634) | |
219-380, gnl|rn3|chr6 (79881631-79881786) | |
219-380, gnl|rn3|chr6 (79881631-79881786) | |
219-380, gnl|rn3|chr6 (79881787-79881634) | |
612-1179, gnl|bosTau2|chr10 (11376535-11377077) | |
612-1179, gnl|Hg17|chr15 (69772765-69772263) |
Aligned organism(s): 51 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
219-380, gnl|bosTau2|chr21 (33452207-33452046) | |
219-380, gnl|canFam2|chr8 (20472357-20472201) | |
219-380, gnl|canFam2|chr8 (20472198-20472356) | |
219-380, gnl|canFam2|chr8 (20472198-20472356) | |
219-380, gnl|canFam2|chr8 (20472357-20472201) | |
219-380, gnl|dasNov1|scaffold_20863 (36167-36291) | |
219-380, gnl|dasNov1|scaffold_20863 (36294-36168) | |
219-380, gnl|dasNov1|scaffold_20863 (36237-36168) | |
219-380, gnl|dasNov1|scaffold_20863 (36167-36235) | |
219-380, gnl|echTel1|scaffold_94935 (3638-3482) | |
219-380, gnl|echTel1|scaffold_94935 (3479-3637) | |
219-380, gnl|echTel1|scaffold_94935 (3479-3637) | |
219-380, gnl|echTel1|scaffold_94935 (3638-3482) | |
219-380, gnl|galGal2|chr5 (34507636-34507480) | |
219-380, gnl|galGal2|chr5 (34507484-34507635) | |
219-380, gnl|galGal2|chr5 (34507636-34507485) | |
219-380, gnl|hg17|chr13 (49364396-49364554) | |
219-380, gnl|Hg17|chr14 (38865817-38865978) | |
219-380, gnl|hg17|chr18 (18250037-18250193) | |
219-380, gnl|hg17|chr7 (142787425-142787583) | |
219-380, gnl|hg17|chr9 (27598966-27599121) | |
219-380, gnl|loxAfr1|scaffold_16139 (16162-16010) | |
219-380, gnl|loxAfr1|scaffold_16139 (16016-16161) | |
219-380, gnl|loxAfr1|scaffold_16139 (16007-16161) | |
219-380, gnl|loxAfr1|scaffold_16139 (16162-16010) | |
219-380, gnl|Mm7|chr12 (57114742-57114903) | |
219-380, gnl|mm7|chr2 (85000648-85000806) | |
219-380, gnl|mm7|chr2 (85000809-85000649) | |
219-380, gnl|mm7|chr2 (85000809-85000649) | |
219-380, gnl|mm7|chr2 (85000648-85000806) | |
219-380, gnl|monDom2|scaffold_8 (89148407-89148548) | |
219-380, gnl|monDom2|scaffold_8 (89148549-89148408) | |
219-380, gnl|monDom2|scaffold_8 (89148549-89148408) | |
219-380, gnl|oryCun1|scaffold_141486 (4929-4830) | |
219-380, gnl|oryCun1|scaffold_141486 (4829-4926) | |
219-380, gnl|oryCun1|scaffold_160992 (4307-4208) | |
219-380, gnl|oryCun1|scaffold_160992 (4253-4317) | |
219-380, gnl|panTro1|chr11 (28137262-28137416) | |
219-380, gnl|panTro1|chr13 (57817305-57817149) | |
219-380, gnl|panTro1|chr14_random (15422737-15422896) | |
219-380, gnl|panTro1|chr17 (14153796-14153953) | |
219-380, gnl|rheMac2|chr15 (49484002-49483846) | |
219-380, gnl|rheMac2|chr17 (28703866-28704024) | |
219-380, gnl|rheMac2|chr18 (15436948-15437104) | |
219-380, gnl|rheMac2|chr3 (181150384-181150542) | |
219-380, gnl|rn3|chr6 (79881787-79881634) | |
219-380, gnl|rn3|chr6 (79881631-79881786) | |
219-380, gnl|rn3|chr6 (79881631-79881786) | |
219-380, gnl|rn3|chr6 (79881787-79881634) | |
612-1179, gnl|bosTau2|chr10 (11376535-11377077) | |
612-1179, gnl|Hg17|chr15 (69772765-69772263) |
Expressed library(ies): 18 entry(ies) | More info |
Expressed library(ies): 18 entry(ies) | Help | Less info |
cki (0.826173) | |
csk (0.562984) | |
cmu (0.55918) | |
pro (0.512033) | |
pty (0.428143) | |
cst (0.420109) | |
kid (0.389206) | |
sto (0.359648) | |
lun (0.300978) | |
lyg (0.266205) | |
ova (0.258264) | |
cbe (0.239234) | |
tes (0.207814) | |
cut (0.169924) | |
nje (0.16592) | |
cje (0.165235) | |
isp (0.150376) | |
sug (0.127291) |
Expressed library(ies): 18 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
cki (0.826173) | |
csk (0.562984) | |
cmu (0.55918) | |
pro (0.512033) | |
pty (0.428143) | |
cst (0.420109) | |
kid (0.389206) | |
sto (0.359648) | |
lun (0.300978) | |
lyg (0.266205) | |
ova (0.258264) | |
cbe (0.239234) | |
tes (0.207814) | |
cut (0.169924) | |
nje (0.16592) | |
cje (0.165235) | |
isp (0.150376) | |
sug (0.127291) |