Non-Coding RNA Search

Ss1.1-rsug02_k17.5

Sequence:


               
               TTGCTGACAGATAACTCTAGGCATTGAAAGTAATATTTGTAGATTCACTATTCATGGTAT
GTGGCCTCCAGCATGTAACATGAGGAATCTTTTTTTTTTTTTTTCCATTAATTGTAGGCT
TTTTGACTTGAGCCAAAACATATGTAAAGGAAATAGAAGTACCACACCTCCTTATGCACC
AGTCAGTTCCTTTGCCTTCAGCGTTTCTAGAAAGAATCCAGCGCACATGACTATGGTTTG
CCGTTGATGTGTTGAAAGGCAGGAAAGAGACAAGGTTTTCTGTGTATTCATCTCATGATG
TCATTTGAAGGGCATGTCCAGATATCTTAATCAGAATTACAAATAGGCTCAAGAATCCGT
CTCAGGTCACTTTACCCAAAAACATTTGAAAATCTGAACCATGAATCTCCTAAAAGTTTC
TCTCCTACAGATTATTAACCATAGATAGCATTGTTTTCTGGAGGCATTTGTGCCATTAGG
TTGCCATTTACCTTCATTTGTTTCCTTTGGTGTTTGGGATGTCTAATTTTGTTGCTTCAT
GTCTTTTTCAGTTTAAAATGTTTGAGTTTGTATATAGTTTTGAAATTGGATTCTGTGTTC
ATTGTTGTTTAGTTTGCATCTTTGTCAAATTATGGTTTTGAAGGTTCATTTGGAATTTAC
TGTTATTCTATAACAGGTTTGCCCTTGTCCAGTATTTATTTATATGCTGTTTACTTTTCA
AGCTGATAAAAGCATTCTCTCAATTTTAAATTTCACTTGGGTCCGTAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGCTGACAGATAACTCTAGGCATTGAAAGTAATATTTGTAGATTCACTATTCATGGTAT
GTGGCCTCCAGCATGTAACATGAGGAATCTTTTTTTTTTTTTTTCCATTAATTGTAGGCT
TTTTGACTTGAGCCAAAACATATGTAAAGGAAATAGAAGTACCACACCTCCTTATGCACC
AGTCAGTTCCTTTGCCTTCAGCGTTTCTAGAAAGAATCCAGCGCACATGACTATGGTTTG
CCGTTGATGTGTTGAAAGGCAGGAAAGAGACAAGGTTTTCTGTGTATTCATCTCATGATG
TCATTTGAAGGGCATGTCCAGATATCTTAATCAGAATTACAAATAGGCTCAAGAATCCGT
CTCAGGTCACTTTACCCAAAAACATTTGAAAATCTGAACCATGAATCTCCTAAAAGTTTC
TCTCCTACAGATTATTAACCATAGATAGCATTGTTTTCTGGAGGCATTTGTGCCATTAGG
TTGCCATTTACCTTCATTTGTTTCCTTTGGTGTTTGGGATGTCTAATTTTGTTGCTTCAT
GTCTTTTTCAGTTTAAAATGTTTGAGTTTGTATATAGTTTTGAAATTGGATTCTGTGTTC
ATTGTTGTTTAGTTTGCATCTTTGTCAAATTATGGTTTTGAAGGTTCATTTGGAATTTAC
TGTTATTCTATAACAGGTTTGCCCTTGTCCAGTATTTATTTATATGCTGTTTACTTTTCA
AGCTGATAAAAGCATTCTCTCAATTTTAAATTTCACTTGGGTCCGTAG

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-768, gnl|bosTau2|chr5 (28316003-28315257)
               

               
               1-768, gnl|Hg17|chr12 (68255372-68256118)
               

               
               1-768, gnl|Mm7|chr10 (116581474-116580773)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-768, gnl|bosTau2|chr5 (28316003-28315257)
               

               
               1-768, gnl|Hg17|chr12 (68255372-68256118)
               

               
               1-768, gnl|Mm7|chr10 (116581474-116580773)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               cbe (0.239234)
               

               
               mgm (0.180343)
               

               
               ski (0.146735)
               

               
               ret (0.128733)
               

               
               sug (0.127291)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (0.239234)
               

               
               mgm (0.180343)
               

               
               ski (0.146735)
               

               
               ret (0.128733)
               

               
               sug (0.127291)

	1-768, gnl\|bosTau2\|chr5 (28316003-28315257)
	1-768, gnl\|Hg17\|chr12 (68255372-68256118)
	1-768, gnl\|Mm7\|chr10 (116581474-116580773)

	cbe (0.239234)
	mgm (0.180343)
	ski (0.146735)
	ret (0.128733)
	sug (0.127291)