Non-Coding RNA Search

Ss1.1-rsug02_m11.5

Sequence:


               
               TTGCTGCTGAATTGGTCCAGACTGCCCTCCCTTTAGAGCTTCCTCAGGTGAAACCAAAGA
GAAATGATGAGGCCAAGGGACTAGGGATGCATTTAAAGGGGCCTCTGGGGCCTGGAGGAA
AGGGGTCCATCTCTGAGCTGAAAGCTGCCACTGCTGGCTGCCCCAGGTATCCGGGTAAAG
ACAGCCCAGGACCGGGCCCTCAGAAGCCCGGTTCCCCACTGCACTCTGCAGATCTTTTGG
AAGAAGAACTAGATCTGCTGCTTAATTTAGATGCACCTGTAAAAGGTGACATCTCATCAG
ACCAGACGTCTTGGGACCTGGAGTCCGAGAAAGGGGGCCAGGTGGCCCAAGAAGAAAAAG
ATCCGGCACAGCCGTCTGTGTTGGAAGAAAAGAAGGTAGAATCTGAGCAACCACGTACAT
CAAAAAATGTTACCGAGGAAGAGCTTGAAGACTGGTTGGACAGCATGATTGCCTAATAAC
AACCCAAGAAACAAGCAGAAGAGACAGAAAGAAACTGAAAAGTGCCTGAAGCCAAATCTA
GTTACCTTGTAAGGGCAGGCGGGCCCAAGGCTGTCCTTGAAGAATAGCCAGTTTACAAGC
TTGGCCTGAGCCTGTGTGGCCATCACGCTTAGCACAGTAGATGCCTTCCTCCACGTTCAG
CAACCTCCGAAACAAGACATCTAAGAGGTTTGCTGCCTTTGTTCTCTGGCTTAGTAATTG
ACTAGATTTCTTAAGGGCAGGCGATATTATGGCCCTTGTTTCCTGTCTCTGCCTTTCATT
GTTGACAGCATCGAAGGTGCTGCTGAAGAGTAGAGCGACAAGCAACCAGGCATGCATTTG
GTCAAAATAAACAAAACGCTGGTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGCTGCTGAATTGGTCCAGACTGCCCTCCCTTTAGAGCTTCCTCAGGTGAAACCAAAGA
GAAATGATGAGGCCAAGGGACTAGGGATGCATTTAAAGGGGCCTCTGGGGCCTGGAGGAA
AGGGGTCCATCTCTGAGCTGAAAGCTGCCACTGCTGGCTGCCCCAGGTATCCGGGTAAAG
ACAGCCCAGGACCGGGCCCTCAGAAGCCCGGTTCCCCACTGCACTCTGCAGATCTTTTGG
AAGAAGAACTAGATCTGCTGCTTAATTTAGATGCACCTGTAAAAGGTGACATCTCATCAG
ACCAGACGTCTTGGGACCTGGAGTCCGAGAAAGGGGGCCAGGTGGCCCAAGAAGAAAAAG
ATCCGGCACAGCCGTCTGTGTTGGAAGAAAAGAAGGTAGAATCTGAGCAACCACGTACAT
CAAAAAATGTTACCGAGGAAGAGCTTGAAGACTGGTTGGACAGCATGATTGCCTAATAAC
AACCCAAGAAACAAGCAGAAGAGACAGAAAGAAACTGAAAAGTGCCTGAAGCCAAATCTA
GTTACCTTGTAAGGGCAGGCGGGCCCAAGGCTGTCCTTGAAGAATAGCCAGTTTACAAGC
TTGGCCTGAGCCTGTGTGGCCATCACGCTTAGCACAGTAGATGCCTTCCTCCACGTTCAG
CAACCTCCGAAACAAGACATCTAAGAGGTTTGCTGCCTTTGTTCTCTGGCTTAGTAATTG
ACTAGATTTCTTAAGGGCAGGCGATATTATGGCCCTTGTTTCCTGTCTCTGCCTTTCATT
GTTGACAGCATCGAAGGTGCTGCTGAAGAGTAGAGCGACAAGCAACCAGGCATGCATTTG
GTCAAAATAAACAAAACGCTGGTC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61823177|ref|XP_590221.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61823177|ref|XP_590221.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               137-241, - strand, RNAz p=0.616042

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               137-241, - strand, RNAz p=0.616042

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               18-354, gnl|bosTau2|chr10 (17680986-17681343)
               

               
               18-354, gnl|Hg17|chr15 (31947351-31946994)
               

               
               18-354, gnl|Mm7|chr2 (112479975-112480308)
               


               
               359-853, gnl|bosTau2|chr10 (17682144-17682637)
               

               
               359-853, gnl|canFam2|chr30 (4169627-4169185)
               

               
               359-853, gnl|dasNov1|scaffold_12199 (13836-13399)
               

               
               359-853, gnl|echTel1|scaffold_320511 (93555-93898)
               

               
               359-853, gnl|galGal2|chr5 (27052442-27052042)
               

               
               359-853, gnl|hg17|chr15 (31945586-31946087)
               

               
               359-853, gnl|Hg17|chr15 (31946223-31945736)
               

               
               359-853, gnl|loxAfr1|scaffold_12675 (17416-16930)
               

               
               359-853, gnl|mm7|chr2 (112481619-112481159)
               

               
               359-853, gnl|Mm7|chr2 (112481015-112481479)
               

               
               359-853, gnl|monDom2|scaffold_12 (11687838-11688365)
               

               
               359-853, gnl|oryCun1|scaffold_110477 (5265-4803)
               

               
               359-853, gnl|panTro1|chr16 (31582180-31582686)
               

               
               359-853, gnl|rheMac2|chr7 (12097185-12097671)
               

               
               359-853, gnl|rn3|chr3 (98372312-98371864)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               18-354, gnl|bosTau2|chr10 (17680986-17681343)
               

               
               18-354, gnl|Hg17|chr15 (31947351-31946994)
               

               
               18-354, gnl|Mm7|chr2 (112479975-112480308)
               


               
               359-853, gnl|bosTau2|chr10 (17682144-17682637)
               

               
               359-853, gnl|canFam2|chr30 (4169627-4169185)
               

               
               359-853, gnl|dasNov1|scaffold_12199 (13836-13399)
               

               
               359-853, gnl|echTel1|scaffold_320511 (93555-93898)
               

               
               359-853, gnl|galGal2|chr5 (27052442-27052042)
               

               
               359-853, gnl|hg17|chr15 (31945586-31946087)
               

               
               359-853, gnl|Hg17|chr15 (31946223-31945736)
               

               
               359-853, gnl|loxAfr1|scaffold_12675 (17416-16930)
               

               
               359-853, gnl|mm7|chr2 (112481619-112481159)
               

               
               359-853, gnl|Mm7|chr2 (112481015-112481479)
               

               
               359-853, gnl|monDom2|scaffold_12 (11687838-11688365)
               

               
               359-853, gnl|oryCun1|scaffold_110477 (5265-4803)
               

               
               359-853, gnl|panTro1|chr16 (31582180-31582686)
               

               
               359-853, gnl|rheMac2|chr7 (12097185-12097671)
               

               
               359-853, gnl|rn3|chr3 (98372312-98371864)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               hlv (0.139256)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               cly (0.120642)
               

               
               cty (0.10408)
               

               
               ldo (0.0970026)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hlv (0.139256)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               cly (0.120642)
               

               
               cty (0.10408)
               

               
               ldo (0.0970026)

	18-354, gnl\|bosTau2\|chr10 (17680986-17681343)
	18-354, gnl\|Hg17\|chr15 (31947351-31946994)
	18-354, gnl\|Mm7\|chr2 (112479975-112480308)

	359-853, gnl\|bosTau2\|chr10 (17682144-17682637)
	359-853, gnl\|canFam2\|chr30 (4169627-4169185)
	359-853, gnl\|dasNov1\|scaffold_12199 (13836-13399)
	359-853, gnl\|echTel1\|scaffold_320511 (93555-93898)
	359-853, gnl\|galGal2\|chr5 (27052442-27052042)
	359-853, gnl\|hg17\|chr15 (31945586-31946087)
	359-853, gnl\|Hg17\|chr15 (31946223-31945736)
	359-853, gnl\|loxAfr1\|scaffold_12675 (17416-16930)
	359-853, gnl\|mm7\|chr2 (112481619-112481159)
	359-853, gnl\|Mm7\|chr2 (112481015-112481479)
	359-853, gnl\|monDom2\|scaffold_12 (11687838-11688365)
	359-853, gnl\|oryCun1\|scaffold_110477 (5265-4803)
	359-853, gnl\|panTro1\|chr16 (31582180-31582686)
	359-853, gnl\|rheMac2\|chr7 (12097185-12097671)
	359-853, gnl\|rn3\|chr3 (98372312-98371864)

	hlv (0.139256)
	ret (0.128733)
	sug (0.127291)
	cly (0.120642)
	cty (0.10408)
	ldo (0.0970026)