Non-Coding RNA Search

Ss1.1-rsug02_o15.5

Sequence:


               
               CTTTTACTGAAAACTGGCTCCCCATCATGTATCCTCCTGATTATTGTGTATTCTAAAATA
GGAAACAAGACTTTAAATTTTAAAAAAGAAAGTTTTATAGTGAATGGACATAAAAAGAAA
TTTGTGGCATTTTTAGTCTAATGCATGTTTTCATCCGCTATCAAATACTGATTATTAAAA
TGATGCGTATTTATCAGAGAATTTGCTGGCGTGTGGCTTAATACATGTAAGTCTAGACCT
CTGACATCATGGTGTTTTCTTAATGCCTCCCATTGCTGGCAGCGGGCTGTGCCCTGCCTG
CCAGCACCAAGGACTTTCAGTTGGGTTGCAGCTATTACATGCATGAGAGGTTTTGAACAG
CAACTTTTAACTGCAAACCTGTAAAATTCTATTTTTTATTTTATAAATGAACAGGGTTTT
AACATGCTCGACTTTAATTTTTTTCAATTGTATGAAGGCCTTAAATAAGCTACATTAAGC
GTAGCTAAAATTATTTATTGGACTAAAAGTAACAGAACTTCATTTCCAGGTTTTCGGGGG
GTTTTTGGTTTTGGTGTGGTTTTTTTTTTTGTTTGTTTTTTGTTTTTGTTTTTTTGCAAA
CGTTTACATTCAATTAAGGGGACAAAATAAACCCGGCACAAATAAATACGTGGCAATTGC
TGGAGCGTATCTGCTTCAATCAATCTTCATCTTGGAGTTCTTTCAGGCCAATCATTTTTA
ACATCTTCTTGACTTGCAGAGCATCAGAATGAACTAATAATACATGTATAAGTGCCAGAC
AGCTTAAATCTGTATCAGGTATTGTAAAGATACACATATGGTATGTTTATTAAAGTTGGA
AATAATGTAAACACGTGAATAAATGTGCAAAACCAAGATCCCAGTACACCATATGCACTC
TGATACCTTAATTTTTTTTATAAATAATAAAAGTGAATATTGAAGCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTTTACTGAAAACTGGCTCCCCATCATGTATCCTCCTGATTATTGTGTATTCTAAAATA
GGAAACAAGACTTTAAATTTTAAAAAAGAAAGTTTTATAGTGAATGGACATAAAAAGAAA
TTTGTGGCATTTTTAGTCTAATGCATGTTTTCATCCGCTATCAAATACTGATTATTAAAA
TGATGCGTATTTATCAGAGAATTTGCTGGCGTGTGGCTTAATACATGTAAGTCTAGACCT
CTGACATCATGGTGTTTTCTTAATGCCTCCCATTGCTGGCAGCGGGCTGTGCCCTGCCTG
CCAGCACCAAGGACTTTCAGTTGGGTTGCAGCTATTACATGCATGAGAGGTTTTGAACAG
CAACTTTTAACTGCAAACCTGTAAAATTCTATTTTTTATTTTATAAATGAACAGGGTTTT
AACATGCTCGACTTTAATTTTTTTCAATTGTATGAAGGCCTTAAATAAGCTACATTAAGC
GTAGCTAAAATTATTTATTGGACTAAAAGTAACAGAACTTCATTTCCAGGTTTTCGGGGG
GTTTTTGGTTTTGGTGTGGTTTTTTTTTTTGTTTGTTTTTTGTTTTTGTTTTTTTGCAAA
CGTTTACATTCAATTAAGGGGACAAAATAAACCCGGCACAAATAAATACGTGGCAATTGC
TGGAGCGTATCTGCTTCAATCAATCTTCATCTTGGAGTTCTTTCAGGCCAATCATTTTTA
ACATCTTCTTGACTTGCAGAGCATCAGAATGAACTAATAATACATGTATAAGTGCCAGAC
AGCTTAAATCTGTATCAGGTATTGTAAAGATACACATATGGTATGTTTATTAAAGTTGGA
AATAATGTAAACACGTGAATAAATGTGCAAAACCAAGATCCCAGTACACCATATGCACTC
TGATACCTTAATTTTTTTTATAAATAATAAAAGTGAATATTGAAGCTT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               236-351, - strand, RNAz p=0.912235

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               236-351, - strand, RNAz p=0.912235

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               1-534, gnl|bosTau2|chr12 (41118009-41117477)
               

               
               1-534, gnl|Hg17|chr13 (102128612-102129155)
               

               
               1-534, gnl|Mm7|chr1 (44242525-44243048)
               


               
               578-948, gnl|bosTau2|chr12 (41117480-41117111)
               

               
               578-948, gnl|Hg17|chr13 (102129152-102129519)
               

               
               578-948, gnl|Mm7|chr1 (44243045-44243387)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-534, gnl|bosTau2|chr12 (41118009-41117477)
               

               
               1-534, gnl|Hg17|chr13 (102128612-102129155)
               

               
               1-534, gnl|Mm7|chr1 (44242525-44243048)
               


               
               578-948, gnl|bosTau2|chr12 (41117480-41117111)
               

               
               578-948, gnl|Hg17|chr13 (102129152-102129519)
               

               
               578-948, gnl|Mm7|chr1 (44243045-44243387)

Expressed library(ies): 8 entry(ies)

More info

Expressed library(ies): 8 entry(ies)

Help | Less info


               
               fcc (0.197785)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               spl (0.143184)
               

               
               ute (0.132784)
               

               
               sug (0.127291)
               

               
               ebs (0.118301)
               

               
               ldo (0.0970026)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.197785)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               spl (0.143184)
               

               
               ute (0.132784)
               

               
               sug (0.127291)
               

               
               ebs (0.118301)
               

               
               ldo (0.0970026)

	1-534, gnl\|bosTau2\|chr12 (41118009-41117477)
	1-534, gnl\|Hg17\|chr13 (102128612-102129155)
	1-534, gnl\|Mm7\|chr1 (44242525-44243048)

	578-948, gnl\|bosTau2\|chr12 (41117480-41117111)
	578-948, gnl\|Hg17\|chr13 (102129152-102129519)
	578-948, gnl\|Mm7\|chr1 (44243045-44243387)

	fcc (0.197785)
	isp (0.150376)
	fat (0.147427)
	spl (0.143184)
	ute (0.132784)
	sug (0.127291)
	ebs (0.118301)
	ldo (0.0970026)