Ss1.1-rsug03_i20.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATAAAAGTTTCTTTAAGGCTGATAAGGTTACAATGCTATGGAATAAAAAAGCTACTGCTG TGTTGGTCATAGCTAGTACAGAAGTTGACAAGACAGGAGCGTCCTACTATGGGGAACAAA CACTGCACTACATTGCAACAAATGGAGAAAGTGCTGTGGTGCAATTACCAAAAAATGGCC CCATTTATGATGTAGTTTGGAATTCTAGTTCTACTGAGTTTTGTGCTGTTTATGGCTTCA TGCCAGCCAAAGCAACAATTTTCAACCTGAAATGTGATCCTGTGTTTGACTTTGGAACTG GTCCTCGTAATGCAGCCTACTACAGCCCTCATGGACATATATTAGTACTAGCTGGATTTG GAAATCTAAGAGGACAAATGGAAGTGTGGGATGTTAAAAACTACAAACTTATTTCTAAAC CAGTGGCCTCTGATTCTACATATTTTGCTTGGTGCCCAGATGGTGAGCATATTTTAACAG CCACATGTGCTCCCAGATTACGTGTTAATAATGGGTACAAGATTTGGCATTATACTGGCT CTGTCCTGCACAAGTATGATGTACCATCAAATGCAGAATTATGGCAAGTTTCTTGGCAGC CATTCCTAGATGGAATCTTTCCAGAAAAATCGATAACTTACCAAGCAGTTCCAAGTGATG TACCCAGTGAAGAACCTAAAGTTGCAACAGCTTACAGACCCCCGGCTTTAAGAAATAAAC CAGTCACTAATTCCAAACTGCATGAGGAGGAACCACCACAGAATATGAAACCACAACCAG GAAATGAGAAACCGTTATCAAAAACTGCCCTTAAAAATCAAAGGAAGCATGAGGCTAAGA AAGCTGCAAAGCAGGAAGCGAGAAGTGACAAGAGTCCAGATATGGCACCTTCTCCTGCCC CACAGAACACACCACGAAATACTGTCTCTCATTCAACTTCTGGAGACCCTGAGATAGACA AAAAAATCAAGAACCTAAAGAAGAAACTGAAAGCAATCGAACAACTGAAAGAACAAGCAG CAACTGGAAAACAGCTAGAAAAAAATCAGTTGGAGAAAATTCAGAAAGAAAAAGCCCTTC TCCAGGAGCTGGAAGATTTGGAACTGGGTATTTAAAGATTCATAGAAAGCAAGTTAGTTA CCAGAAATCAATACAAAATCACACTTTCTGTTAAGCTCATTGGTGTACATGCAATATCCA TGTGCTCACATTTAATATTCACTTATAATTTTAACCATTAATCCAAGATTCTGCATATAT GTAAAATTATTAATAATGGTCTGTTAAATTGGCTTTTACATCCTGCATCCTATATCATGT CAACACATGATATAGAAAAGAAACATTTTTTTTTAAGCTAAGCTCGACAGATTGAAAGAC CAGTGTCATTGCTTTTTAGTAGGGGACAGTCTTTAACAGATAAATGAATAAAGACATTTT AAATATAAAAAAAAAAAAAAAAAGGCGCCGCTCGCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATAAAAGTTTCTTTAAGGCTGATAAGGTTACAATGCTATGGAATAAAAAAGCTACTGCTG TGTTGGTCATAGCTAGTACAGAAGTTGACAAGACAGGAGCGTCCTACTATGGGGAACAAA CACTGCACTACATTGCAACAAATGGAGAAAGTGCTGTGGTGCAATTACCAAAAAATGGCC CCATTTATGATGTAGTTTGGAATTCTAGTTCTACTGAGTTTTGTGCTGTTTATGGCTTCA TGCCAGCCAAAGCAACAATTTTCAACCTGAAATGTGATCCTGTGTTTGACTTTGGAACTG GTCCTCGTAATGCAGCCTACTACAGCCCTCATGGACATATATTAGTACTAGCTGGATTTG GAAATCTAAGAGGACAAATGGAAGTGTGGGATGTTAAAAACTACAAACTTATTTCTAAAC CAGTGGCCTCTGATTCTACATATTTTGCTTGGTGCCCAGATGGTGAGCATATTTTAACAG CCACATGTGCTCCCAGATTACGTGTTAATAATGGGTACAAGATTTGGCATTATACTGGCT CTGTCCTGCACAAGTATGATGTACCATCAAATGCAGAATTATGGCAAGTTTCTTGGCAGC CATTCCTAGATGGAATCTTTCCAGAAAAATCGATAACTTACCAAGCAGTTCCAAGTGATG TACCCAGTGAAGAACCTAAAGTTGCAACAGCTTACAGACCCCCGGCTTTAAGAAATAAAC CAGTCACTAATTCCAAACTGCATGAGGAGGAACCACCACAGAATATGAAACCACAACCAG GAAATGAGAAACCGTTATCAAAAACTGCCCTTAAAAATCAAAGGAAGCATGAGGCTAAGA AAGCTGCAAAGCAGGAAGCGAGAAGTGACAAGAGTCCAGATATGGCACCTTCTCCTGCCC CACAGAACACACCACGAAATACTGTCTCTCATTCAACTTCTGGAGACCCTGAGATAGACA AAAAAATCAAGAACCTAAAGAAGAAACTGAAAGCAATCGAACAACTGAAAGAACAAGCAG CAACTGGAAAACAGCTAGAAAAAAATCAGTTGGAGAAAATTCAGAAAGAAAAAGCCCTTC TCCAGGAGCTGGAAGATTTGGAACTGGGTATTTAAAGATTCATAGAAAGCAAGTTAGTTA CCAGAAATCAATACAAAATCACACTTTCTGTTAAGCTCATTGGTGTACATGCAATATCCA TGTGCTCACATTTAATATTCACTTATAATTTTAACCATTAATCCAAGATTCTGCATATAT GTAAAATTATTAATAATGGTCTGTTAAATTGGCTTTTACATCCTGCATCCTATATCATGT CAACACATGATATAGAAAAGAAACATTTTTTTTTAAGCTAAGCTCGACAGATTGAAAGAC CAGTGTCATTGCTTTTTAGTAGGGGACAGTCTTTAACAGATAAATGAATAAAGACATTTT AAATATAAAAAAAAAAAAAAAAAGGCGCCGCTCGCA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 50-168, - strand, RNAz p=0.774965 | |
| 1007-1161, - strand, RNAz p=0.997774 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 50-168, - strand, RNAz p=0.774965 | |
| 1007-1161, - strand, RNAz p=0.997774 |
| Aligned organism(s): 23 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
| 50-168, gnl|bosTau2|chr1 (74748056-74748174) | |
| 50-168, gnl|canFam2|chr23 (48274543-48274702) | |
| 50-168, gnl|danRer3|chr6 (10961865-10962009) | |
| 50-168, gnl|dasNov1|scaffold_20076 (13128-12969) | |
| 50-168, gnl|echTel1|scaffold_209883 (5557-5398) | |
| 50-168, gnl|fr1|chrUn (292243686-292243831) | |
| 50-168, gnl|galGal2|chr9 (23085357-23085197) | |
| 50-168, gnl|hg17|chr3 (151768646-151768806) | |
| 50-168, gnl|Hg17|chr3 (151768659-151768777) | |
| 50-168, gnl|loxAfr1|scaffold_19256 (3100-3218) | |
| 50-168, gnl|mm7|chr3 (58674258-58674419) | |
| 50-168, gnl|Mm7|chr3 (58674270-58674388) | |
| 50-168, gnl|monDom2|scaffold_28 (22317006-22317165) | |
| 50-168, gnl|oryCun1|scaffold_142832 (16849-16690) | |
| 50-168, gnl|panTro1|chr2 (154962908-154963068) | |
| 50-168, gnl|rheMac2|chr2 (137203308-137203148) | |
| 50-168, gnl|rn3|chr2 (147841591-147841745) | |
| 50-168, gnl|tetNig1|chrUn_random (135643585-135643448) | |
| 50-168, gnl|xenTro1|scaffold_340 (1146564-1146725) | |
| 260-858, gnl|bosTau2|chr16 (4371283-4370698) | |
| 260-858, gnl|Hg17|chr7 (149619686-149618998) | |
| 928-1231, gnl|bosTau2|chr16 (4370677-4370371) | |
| 928-1231, gnl|Hg17|chr7 (149618977-149618676) |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 50-168, gnl|bosTau2|chr1 (74748056-74748174) | |
| 50-168, gnl|canFam2|chr23 (48274543-48274702) | |
| 50-168, gnl|danRer3|chr6 (10961865-10962009) | |
| 50-168, gnl|dasNov1|scaffold_20076 (13128-12969) | |
| 50-168, gnl|echTel1|scaffold_209883 (5557-5398) | |
| 50-168, gnl|fr1|chrUn (292243686-292243831) | |
| 50-168, gnl|galGal2|chr9 (23085357-23085197) | |
| 50-168, gnl|hg17|chr3 (151768646-151768806) | |
| 50-168, gnl|Hg17|chr3 (151768659-151768777) | |
| 50-168, gnl|loxAfr1|scaffold_19256 (3100-3218) | |
| 50-168, gnl|mm7|chr3 (58674258-58674419) | |
| 50-168, gnl|Mm7|chr3 (58674270-58674388) | |
| 50-168, gnl|monDom2|scaffold_28 (22317006-22317165) | |
| 50-168, gnl|oryCun1|scaffold_142832 (16849-16690) | |
| 50-168, gnl|panTro1|chr2 (154962908-154963068) | |
| 50-168, gnl|rheMac2|chr2 (137203308-137203148) | |
| 50-168, gnl|rn3|chr2 (147841591-147841745) | |
| 50-168, gnl|tetNig1|chrUn_random (135643585-135643448) | |
| 50-168, gnl|xenTro1|scaffold_340 (1146564-1146725) | |
| 260-858, gnl|bosTau2|chr16 (4371283-4370698) | |
| 260-858, gnl|Hg17|chr7 (149619686-149618998) | |
| 928-1231, gnl|bosTau2|chr16 (4370677-4370371) | |
| 928-1231, gnl|Hg17|chr7 (149618977-149618676) |
| Expressed library(ies): 37 entry(ies) | More info |
| Expressed library(ies): 37 entry(ies) | Help | Less info |
| sag (0.730861) | |
| vin (0.665115) | |
| tra (0.61546) | |
| sug (0.509165) | |
| tbr (0.462535) | |
| mgp (0.461361) | |
| lin (0.436808) | |
| fcc (0.39557) | |
| kid (0.389206) | |
| sin (0.349895) | |
| rec (0.346141) | |
| fco (0.314416) | |
| bfe (0.299715) | |
| ski (0.29347) | |
| cte (0.29274) | |
| liv (0.292569) | |
| csk (0.281492) | |
| nca (0.273748) | |
| ste (0.270416) | |
| hea (0.204499) | |
| cmu (0.186393) | |
| nco (0.161734) | |
| lun (0.150489) | |
| isp (0.150376) | |
| hyp (0.142837) | |
| ssp (0.13552) | |
| lyg (0.133103) | |
| ute (0.132784) | |
| ova (0.129132) | |
| ret (0.128733) | |
| thg (0.126791) | |
| bla (0.124347) | |
| eru (0.120048) | |
| jca (0.11396) | |
| spc (0.113366) | |
| cty (0.10408) | |
| ldo (0.0970026) |
| Expressed library(ies): 37 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sag (0.730861) | |
| vin (0.665115) | |
| tra (0.61546) | |
| sug (0.509165) | |
| tbr (0.462535) | |
| mgp (0.461361) | |
| lin (0.436808) | |
| fcc (0.39557) | |
| kid (0.389206) | |
| sin (0.349895) | |
| rec (0.346141) | |
| fco (0.314416) | |
| bfe (0.299715) | |
| ski (0.29347) | |
| cte (0.29274) | |
| liv (0.292569) | |
| csk (0.281492) | |
| nca (0.273748) | |
| ste (0.270416) | |
| hea (0.204499) | |
| cmu (0.186393) | |
| nco (0.161734) | |
| lun (0.150489) | |
| isp (0.150376) | |
| hyp (0.142837) | |
| ssp (0.13552) | |
| lyg (0.133103) | |
| ute (0.132784) | |
| ova (0.129132) | |
| ret (0.128733) | |
| thg (0.126791) | |
| bla (0.124347) | |
| eru (0.120048) | |
| jca (0.11396) | |
| spc (0.113366) | |
| cty (0.10408) | |
| ldo (0.0970026) |