Non-Coding RNA Search

Ss1.1-rsug04_d12.5

Sequence:


               
               TTTTTTTGGCCGTGCCCACGGCATGTAGAAGTTCCCAGGTCAGGGATCAAACCCATGTCC
ACAGCAGTAACCAGAGCCACAGCAATGACACTGGATCCTTAACTCACTGAGTCACCAGGA
AACTCTATCATGCATCATTTTTTATTGCAAAATCAGGCTTTAGTTTGGGAAGGAGAATAG
TGTAGAATATCCTTAGTAAGATAAATCGCAACAACAACAAAAAGTAAGCTCTGTAGCCCA
AAGTGGATCAATGAGAAAGTCTTTTGACGAAATGCTTCTTTTAACTATAAGCAGCAAAGA
TAAATGTATATTTCACCTACCCCGTATCGATTGTGCTGACCCATTCATTTCCACACTTAG
AGCCTTTAAACATCCCGTTCATTGAAAGTCCTTATATGTGTTAGATGGACTGTTTCTCCA
TCTGAAAGATAAAAATAATGAAAATGTATAAAACTTAGCAAAATTCCACTTATTGTAGAA
CACTTGGGCATTCAAACTCAGGAAAAAGGGGCACCTAAAAAAAGAAAGAGGTTGCGTGAA
TTTTTCCATAATTTTCATTCAGTAACAGTCCATTTCTACCTAGCTTGCCTTCCGCTGTCA
ATAGAGTCAGCCTTTCAGGCAACATCTTTGTCATGCCCAGAAAGGACCTGAGCTGTCAGG
GAACACAATCTCATGGACTCCTTCTTTGTTTTGTGTCCTAGAGTTGTGCACACAAATTAG
GGCATGCCTTCAATGCTTAGTCTTTACTTTAAACCTGCCCTTTGACAATCAGGTGCTAAT
GACTATGCTGTTAGAACCAGCACAAAAGTATTGTCTTGTAAGTATCTATTCCTCCTGGGT
TGGAAGAAAGTCTAGCTCAATCCTATTCAAGTGGGTGTCACATTTTTCACCTGTGTTTTG
TGAATTAATAGAATATGGAGGAGAATAAGTGATTTAAACCATGTCTGGCTGAGTTCCCGT
CGTGGCACAATGGAGACGAATCCGACTGGGAACCATGAGGTTGTGGGTTCGATCCCTGGC
CTCGCTCAGTGGGTTAACGATCCGGCATCACTGTGAGCTGTGGTGTAGGTTGCAGATGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTGGCCGTGCCCACGGCATGTAGAAGTTCCCAGGTCAGGGATCAAACCCATGTCC
ACAGCAGTAACCAGAGCCACAGCAATGACACTGGATCCTTAACTCACTGAGTCACCAGGA
AACTCTATCATGCATCATTTTTTATTGCAAAATCAGGCTTTAGTTTGGGAAGGAGAATAG
TGTAGAATATCCTTAGTAAGATAAATCGCAACAACAACAAAAAGTAAGCTCTGTAGCCCA
AAGTGGATCAATGAGAAAGTCTTTTGACGAAATGCTTCTTTTAACTATAAGCAGCAAAGA
TAAATGTATATTTCACCTACCCCGTATCGATTGTGCTGACCCATTCATTTCCACACTTAG
AGCCTTTAAACATCCCGTTCATTGAAAGTCCTTATATGTGTTAGATGGACTGTTTCTCCA
TCTGAAAGATAAAAATAATGAAAATGTATAAAACTTAGCAAAATTCCACTTATTGTAGAA
CACTTGGGCATTCAAACTCAGGAAAAAGGGGCACCTAAAAAAAGAAAGAGGTTGCGTGAA
TTTTTCCATAATTTTCATTCAGTAACAGTCCATTTCTACCTAGCTTGCCTTCCGCTGTCA
ATAGAGTCAGCCTTTCAGGCAACATCTTTGTCATGCCCAGAAAGGACCTGAGCTGTCAGG
GAACACAATCTCATGGACTCCTTCTTTGTTTTGTGTCCTAGAGTTGTGCACACAAATTAG
GGCATGCCTTCAATGCTTAGTCTTTACTTTAAACCTGCCCTTTGACAATCAGGTGCTAAT
GACTATGCTGTTAGAACCAGCACAAAAGTATTGTCTTGTAAGTATCTATTCCTCCTGGGT
TGGAAGAAAGTCTAGCTCAATCCTATTCAAGTGGGTGTCACATTTTTCACCTGTGTTTTG
TGAATTAATAGAATATGGAGGAGAATAAGTGATTTAAACCATGTCTGGCTGAGTTCCCGT
CGTGGCACAATGGAGACGAATCCGACTGGGAACCATGAGGTTGTGGGTTCGATCCCTGGC
CTCGCTCAGTGGGTTAACGATCCGGCATCACTGTGAGCTGTGGTGTAGGTTGCAGATGCA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               837-939, + strand, RNAz p=0.55277

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               837-939, + strand, RNAz p=0.55277

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               142-939, gnl|bosTau2|chr18 (13880009-13879190)
               

               
               142-939, gnl|Hg17|chr16 (67898791-67899753)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               142-939, gnl|bosTau2|chr18 (13880009-13879190)
               

               
               142-939, gnl|Hg17|chr16 (67898791-67899753)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               fat (0.147427)
               

               
               lin (0.145603)
               

               
               lnt (0.142308)
               

               
               cst (0.140036)
               

               
               che (0.136314)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               eru (0.120048)
               

               
               cbl (0.114797)
               

               
               ldo (0.0970026)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fat (0.147427)
               

               
               lin (0.145603)
               

               
               lnt (0.142308)
               

               
               cst (0.140036)
               

               
               che (0.136314)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               eru (0.120048)
               

               
               cbl (0.114797)
               

               
               ldo (0.0970026)

	142-939, gnl\|bosTau2\|chr18 (13880009-13879190)
	142-939, gnl\|Hg17\|chr16 (67898791-67899753)

	fat (0.147427)
	lin (0.145603)
	lnt (0.142308)
	cst (0.140036)
	che (0.136314)
	sug (0.127291)
	bla (0.124347)
	eru (0.120048)
	cbl (0.114797)
	ldo (0.0970026)