Non-Coding RNA Search

Ss1.1-rsug06_d7.5

Sequence:


               
               GCCACATCAAAGACTTCATCGAAAAATACCAAGGACCTCAAAGAAGTCCTCCCTTTTCCT
TGGCAACAGCTCTTCCTTTCCTCAAATTGCTAGATGAAACACTCACACTGGAAGAAGCAG
ATTTACAGAATGCTGTAATCATTCAGAGACTCAAAAAAACCGCTGAACCTTTTAAAGAAC
TTTCATAACATTGATTATTGATATATTAGGTGGAAAGTTTCCAGAGAAATGATGGTTCCA
GGGAAAGTGGGCATGCAAACCAAAACAAGGGAAAGTCAGATTTGCTGAGCTTTATACTGT
TTAGCTCCTTCCTGATGAGACGATATCTAAACAAGTACAAGTTAGGAAAGTAAACTATGA
CTGGACACGTATTCTGTGAACTTTTTCTAGAAGGCTACTCAGAAAGAAAAATATACTTAT
TTTCAAATATCAGTTATTCAGCATAAGATATATTAAATAACTATGTCATTTAAAATCTTA
ATATGCCATTAGTTAACAGATACATTTACAGCATCTTTCATTCAAACATTCGCAAATAAT
AGTGATTTATTTAAATGTTAGCAGTTTCAGATTTTTAAAATAGCAATACATTAAAAATGA
AAAATTGTACATGGCAGGTTTGAATTCAGTGTAGTTTTTAAATCTGAGATAATCAGAAGG
TTGGAAGGGGAGTTACTGTCATGGCTCAGCAGAAACAAATCTGACTAGTAGCCATGAGGA
CACAAGTTCGATCCCTGGCATCACTCAGTGGGTTAAGGATCTGGTGTTGCTGTGAGCTGT
GGTGTAGGTTGCAGACATCACTCCGATCTGCCATTGCTATGGCTGTGGCATAGGCCAGTG
GCTACAGCTCCAATTTGACCTCTAGCCTGGGAACCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCACATCAAAGACTTCATCGAAAAATACCAAGGACCTCAAAGAAGTCCTCCCTTTTCCT
TGGCAACAGCTCTTCCTTTCCTCAAATTGCTAGATGAAACACTCACACTGGAAGAAGCAG
ATTTACAGAATGCTGTAATCATTCAGAGACTCAAAAAAACCGCTGAACCTTTTAAAGAAC
TTTCATAACATTGATTATTGATATATTAGGTGGAAAGTTTCCAGAGAAATGATGGTTCCA
GGGAAAGTGGGCATGCAAACCAAAACAAGGGAAAGTCAGATTTGCTGAGCTTTATACTGT
TTAGCTCCTTCCTGATGAGACGATATCTAAACAAGTACAAGTTAGGAAAGTAAACTATGA
CTGGACACGTATTCTGTGAACTTTTTCTAGAAGGCTACTCAGAAAGAAAAATATACTTAT
TTTCAAATATCAGTTATTCAGCATAAGATATATTAAATAACTATGTCATTTAAAATCTTA
ATATGCCATTAGTTAACAGATACATTTACAGCATCTTTCATTCAAACATTCGCAAATAAT
AGTGATTTATTTAAATGTTAGCAGTTTCAGATTTTTAAAATAGCAATACATTAAAAATGA
AAAATTGTACATGGCAGGTTTGAATTCAGTGTAGTTTTTAAATCTGAGATAATCAGAAGG
TTGGAAGGGGAGTTACTGTCATGGCTCAGCAGAAACAAATCTGACTAGTAGCCATGAGGA
CACAAGTTCGATCCCTGGCATCACTCAGTGGGTTAAGGATCTGGTGTTGCTGTGAGCTGT
GGTGTAGGTTGCAGACATCACTCCGATCTGCCATTGCTATGGCTGTGGCATAGGCCAGTG
GCTACAGCTCCAATTTGACCTCTAGCCTGGGAACCT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-669, gnl|bosTau2|chr11 (56385544-56384880)
               

               
               1-669, gnl|Hg17|chr2 (24134198-24134926)
               

               
               1-669, gnl|Mm7|chr12 (4824480-4823868)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-669, gnl|bosTau2|chr11 (56385544-56384880)
               

               
               1-669, gnl|Hg17|chr2 (24134198-24134926)
               

               
               1-669, gnl|Mm7|chr12 (4824480-4823868)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

Help | Less info


               
               isp (0.300752)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               ldo (0.0970026)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               isp (0.300752)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               ldo (0.0970026)

	1-669, gnl\|bosTau2\|chr11 (56385544-56384880)
	1-669, gnl\|Hg17\|chr2 (24134198-24134926)
	1-669, gnl\|Mm7\|chr12 (4824480-4823868)

	isp (0.300752)
	ret (0.128733)
	sug (0.127291)
	bla (0.124347)
	ldo (0.0970026)