Non-Coding RNA Search

Ss1.1-rsug08_i11.5

Sequence:


               
               GTGGCAAAGGAAACTGTCCTTTTCATTTTTTTTTTTTAAAGAATGTAAATAGAAAAGTTT
TTAACGGTTTTATATAGATTTCACTATAAATAAGCATTTTAAGTGACAAATGTTGAACTG
TACATACATATATCAGCATAACTGCCCAGTTTTTTTGGTGCTGAAGTACTGTAAGTAGAA
TTCATCAACGGTCTCCTAATTTTTGCATCTATACCTGGAAAGAAAAAGCTGTGATCCAGT
AGTAAATAAACTCCCACCGGAGTGACACTGCAGATTTAAACACAAGCATTCATAAGATGC
ACTGATCTCTGGTAGTTGTCATTATTTCTCCTAGGTGATAATGACTTATACCCATAGATG
GAGCTGTTGGATGTTATTTTATTGTACAAATTCATGTTTAAAAGACTTTGCGACTGTTTC
CAGTTAAGTAATTTTTTTAACCTCTTGGGTCATAGACTTCTTTGAAAATCTGATTACACT
ATGAACTCTCTCACCAAAAAGTTACACATACCAATATACATGTTAGGTTTTGCATATATT
TTGAGGGGTGTGTAGGCCCCTAAGTCTATCCATGTATTCCAGGTTAAGCCCTCTGTTATG
GTCAATTCCTTCCAGGTGTAAGTTTTTATAAAATAAAATATCTTTTAAATATTCATGGAT
CAGGTAACAAGAGCAAACTTGAATAAAGTTATGTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGGCAAAGGAAACTGTCCTTTTCATTTTTTTTTTTTAAAGAATGTAAATAGAAAAGTTT
TTAACGGTTTTATATAGATTTCACTATAAATAAGCATTTTAAGTGACAAATGTTGAACTG
TACATACATATATCAGCATAACTGCCCAGTTTTTTTGGTGCTGAAGTACTGTAAGTAGAA
TTCATCAACGGTCTCCTAATTTTTGCATCTATACCTGGAAAGAAAAAGCTGTGATCCAGT
AGTAAATAAACTCCCACCGGAGTGACACTGCAGATTTAAACACAAGCATTCATAAGATGC
ACTGATCTCTGGTAGTTGTCATTATTTCTCCTAGGTGATAATGACTTATACCCATAGATG
GAGCTGTTGGATGTTATTTTATTGTACAAATTCATGTTTAAAAGACTTTGCGACTGTTTC
CAGTTAAGTAATTTTTTTAACCTCTTGGGTCATAGACTTCTTTGAAAATCTGATTACACT
ATGAACTCTCTCACCAAAAAGTTACACATACCAATATACATGTTAGGTTTTGCATATATT
TTGAGGGGTGTGTAGGCCCCTAAGTCTATCCATGTATTCCAGGTTAAGCCCTCTGTTATG
GTCAATTCCTTCCAGGTGTAAGTTTTTATAAAATAAAATATCTTTTAAATATTCATGGAT
CAGGTAACAAGAGCAAACTTGAATAAAGTTATGTTC

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-692, gnl|bosTau2|chr9 (7489503-7488809)
               

               
               1-692, gnl|Hg17|chr11 (75939977-75940656)
               

               
               1-692, gnl|Mm7|chr7 (94621507-94620807)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-692, gnl|bosTau2|chr9 (7489503-7488809)
               

               
               1-692, gnl|Hg17|chr11 (75939977-75940656)
               

               
               1-692, gnl|Mm7|chr7 (94621507-94620807)

Expressed library(ies): 6 entry(ies)

More info

Expressed library(ies): 6 entry(ies)

Help | Less info


               
               fcc (0.39557)
               

               
               aor (0.195274)
               

               
               sag (0.182715)
               

               
               fat (0.147427)
               

               
               sug (0.127291)
               

               
               ldo (0.0970026)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.39557)
               

               
               aor (0.195274)
               

               
               sag (0.182715)
               

               
               fat (0.147427)
               

               
               sug (0.127291)
               

               
               ldo (0.0970026)

	1-692, gnl\|bosTau2\|chr9 (7489503-7488809)
	1-692, gnl\|Hg17\|chr11 (75939977-75940656)
	1-692, gnl\|Mm7\|chr7 (94621507-94620807)

	fcc (0.39557)
	aor (0.195274)
	sag (0.182715)
	fat (0.147427)
	sug (0.127291)
	ldo (0.0970026)