Non-Coding RNA Search

Ss1.1-rsug08_i15.5

Sequence:


               
               GTTACTAGACGTCGAATGGTTCATCGTGCTCTTTCATCAGCACAGCGACAGAGACTGTCA
TCCAACAATAACAAGAAGAAAAATTAGACAGTATTTTTAACTTTTTTCTCTATCTGAAGT
GTTCACACTTATACATGTAGGACAATAAGCAGGACCGTCTGGGCCGGTCTGCATAAATGC
TGTATACATACCAGATTTGATGCTGCATATAGGGTATGGAATTGCACATCCATCTCATAG
GAATTGTAAATGGTTTGAATAGGAGGAAAGTAATTTTTGTTGCATTATAAAATGTCTAAC
TGCATTATTTGTATGTCATAACTTTTTTGGGAGAAACATCTTTTTATTTCCCACATTCCT
GGTTATTTTCTTCATTGCTTTGAATTGAATTTTTATATCTATTTTTATATGTAACTCTTT
TTTTACCTCATGTTTTTATTTGTTTTGCACATTTCTCATACCACAGGTATTGAAGCCCCT
GGGTGATAATTTGATGGAGGAAAACATAAGGCAGTCTGTAACAAACTCTATCAAAGCAGG
CCTGACTGACCAGGTGTCTCATCATGCCAGATTAAAGACAGACTGACAGTTCATCTCCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTACTAGACGTCGAATGGTTCATCGTGCTCTTTCATCAGCACAGCGACAGAGACTGTCA
TCCAACAATAACAAGAAGAAAAATTAGACAGTATTTTTAACTTTTTTCTCTATCTGAAGT
GTTCACACTTATACATGTAGGACAATAAGCAGGACCGTCTGGGCCGGTCTGCATAAATGC
TGTATACATACCAGATTTGATGCTGCATATAGGGTATGGAATTGCACATCCATCTCATAG
GAATTGTAAATGGTTTGAATAGGAGGAAAGTAATTTTTGTTGCATTATAAAATGTCTAAC
TGCATTATTTGTATGTCATAACTTTTTTGGGAGAAACATCTTTTTATTTCCCACATTCCT
GGTTATTTTCTTCATTGCTTTGAATTGAATTTTTATATCTATTTTTATATGTAACTCTTT
TTTTACCTCATGTTTTTATTTGTTTTGCACATTTCTCATACCACAGGTATTGAAGCCCCT
GGGTGATAATTTGATGGAGGAAAACATAAGGCAGTCTGTAACAAACTCTATCAAAGCAGG
CCTGACTGACCAGGTGTCTCATCATGCCAGATTAAAGACAGACTGACAGTTCATCTCCTC

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               80-199, - strand, RNAz p=0.733999
               

               
               409-600, - strand, RNAz p=0.86001

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               80-199, - strand, RNAz p=0.733999
               

               
               409-600, - strand, RNAz p=0.86001

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-600, gnl|bosTau2|chr11 (16439589-16440192)
               

               
               1-600, gnl|Hg17|chr2 (38435362-38434773)
               

               
               1-600, gnl|Mm7|chr17 (78146485-78145858)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-600, gnl|bosTau2|chr11 (16439589-16440192)
               

               
               1-600, gnl|Hg17|chr2 (38435362-38434773)
               

               
               1-600, gnl|Mm7|chr17 (78146485-78145858)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               tra (0.246184)
               

               
               ece (0.229305)
               

               
               lyg (0.133103)
               

               
               sug (0.127291)
               

               
               jej (0.0989218)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tra (0.246184)
               

               
               ece (0.229305)
               

               
               lyg (0.133103)
               

               
               sug (0.127291)
               

               
               jej (0.0989218)

	80-199, - strand, RNAz p=0.733999
	409-600, - strand, RNAz p=0.86001

	1-600, gnl\|bosTau2\|chr11 (16439589-16440192)
	1-600, gnl\|Hg17\|chr2 (38435362-38434773)
	1-600, gnl\|Mm7\|chr17 (78146485-78145858)

	tra (0.246184)
	ece (0.229305)
	lyg (0.133103)
	sug (0.127291)
	jej (0.0989218)