Ss1.1-rsug08_i5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCTCCCGTCGGTCTCCGGCGAGACTGGCTGCAGGGAGGCCTGAAAGCGGGCGGAGAGGAG AGCGGGAGGCCGGAGCTTATTTAATGAAAAGTCCCGTAGATTGAAAAACCAAACATGAGG GTAGCAGGTGCTGCAAAGTTGGTGGTAGCTGTGGCAGTATTTTTACTGACATTCTATGTT ATATCTCAAGTATTTGAAATAAAAATGGATGCAAGTTTAGGAAATCTATTTGCAAGGTCA GCCTTGGACACAGCTGCACGTCCTACAAAACCTCCCAGATATAAATGTGGGATCTCAAAA GCTTGCCCTGAGAAGCATTTTGCTTTTAAAATGGCAAGTGGAGCAGCCAATGTGGTGGGA CCCAAAATCTGCCTGGAAGACAATGTTTTAATGAGTGGTGTTAAGAATAATGTTGGAAGA GGGATCAATGTTGCCTTGGTAAATGGGAAAACAGGAGAACTATTAGACACCAGATATTTC GACATGTGGGGAGGAAATGTGGCTCCGTTTATTGAGTTTCTTAAGTCCATACAAGATGGA ACAATAGTCTTAATGGGAACATACGATGATGGAGCAACCAAACTCAATGATGAAGCAAGG CGGCTCATTGCTGAATTGGGGAGTACATCCATTATTAATCTTGGTTTCAGAGACAACTGG GTCTTCTGTGGTGGGAAAGGCATTAAGACAAAAAGCCCTTTTGAACAGCACATAAAGAAC AATAAGGACACAAACAAATATGAAGGATGGCCTGAAGTTGTGGAAATGGAAGGATGCATC CCCCAGAAGCAAGACTGACATGGAGCAAACTGAAGGGCACCCACTGTCACTATTAATGGG GAAGCTGTAACAGAACAAGTACATGTAAATATTTTAAGAGCATGCAGTCATCTCGGTGTA TGCATGAACATTCTCTCTTTTGATATCAGGATTATTTATTGCTAACGTAAATAGGTATCT TTGTAAATAGTCATCATGAGAAGCAAATCACTGAAGTGTTTCTTAGCACATCTCCGTAAT GATACAATGTTTAGACTGCTATGATAATGCCATCTTTTAATTCTAAAAGCATACCCAGTG GATAACTGAACAGATTGGAAAAATAGAGGGATATATATACAAGTTGCGATGAAAATCTAT CATGGAATAATATGGATTTTAGGGAAGAGACTTTGTTTCTTTTATATATATATTGCCTTT GATGATAGTATCTTTTAAATTAAAAAGATATTTGGCAAGTTGTATGTGTAATATGTACAG TCTGACTCTTCTGTGGTACTTCTTTTCGTAGTCTTTCTCTTCCCATCCCAAGAAACCTAG AAATAAAATATGAAGACTTCTATCAAATATGTGAAAAGCACAACAGAATTCTTTTTTTAA GTGTACACAGGAGAAAGTAAATATATCAAGGCAGATGGCGTTCAAGACTGTAGCTTGCTG GATTTGGTGTTAGCAGTGGGAATCACTTGATTTCGTATGAGCCGTTTAGAGTACGGCTGC TCAGAGTAAGAGCTGAGGGGCCGCCAAGTCCCTTCCCAGCCTCTGTAGGTCCTTCAGGAA AGCATGTCAGTATAGTTAGAGCAACACTGGCCTAAGTTGTCCTCATTTAATTGTTATCAC AATGGACCAAGTGGCTTAGAAAGAGGCATGCTTTAACATCAACAATAATTTTGATTTGTA AACCAAGAAATTCTGTTACTTACGTTCATCTAACTTCCTCACAGCAGTTTCGGCCTGAAA AGATAACGATGTATTTAGAAAAGTCCTAATGACTGATTGGAACTAATAATGTCTAAAAAA TACTTTATTTGATACACAATGACTTTGTAATCAATTCTACATAAAAATATAAGAGATCTA ACTTTTTTGTTAACCTCAGATATTTGCAGAATGACTCAAGTTTTTAAAATATTTTTAGGG CATTAAATATCTACCGTGTATGAAGGATCTTAAACTGGAGCATTGAAAATGTAATGACCA AGCAGCCATTCACAATAAAAGGCAGTCCTTAAATTCTAGATCTAAGTTTTAGGTGATTTA TATATAAAAAAACTAAAAGCAGTATTTTTTATTTTGCTGTAACCAAGTTGGAAGTTATTC AGCTACTTCTTAAATATCAGTGAGTTTGGGGGTACTCTTTCCTCCCCCAGACCGAATGTA ATTCATGGTTAAGTGCACCTTATACATTCACAATTTTTGTAAACTTTTCAGACTTTTGGT GCTGTTATGCTACACCACAGTCAGCATGTGTATTTTGACGTTTAAAATACTTTCCTCGCT TCTGTAAATTAAAAGAATAGCTATTTTAGATTTCCAGAGATTGTGAAATAAATGTTGCTT TTTTTCAAAAAAAAAAAAAAAAAAAAGAGAGAGAGAGAGAGAATAAATACTCTTGATTTG GCATTGTGAGTTTTTTTGTATTACCTGACCAGTGATATGACCACAGAACTTCACACTGAG GTCTGTCGAGCGTTTATTGTTCTGCTTAACATGCAAAATTTAAGTCATTCCTATGGTTAA ACATACCCATTTCCTCAGGCTGTATCTTAACATGGATAGAATTTAAGTATTGAAATGGCA GGACACCCTTTCATGTTACAAGGACTGTAACATGATAGTTTTGTAGAGGTGTATAAAATG CCAGAAGAAGGGATAAAGATTGATTATGTAACTGCTTTCATGCAGTGTGCTTTTGTTTCA ATTCTGTCTTGCATAGATTATGCCAGCTTAACTTTGGAAGCAATAATTTTACTGTATTTT GTTTTCAGATAGCTTTCAAAAATCAGCATTGCAAAATGTAGCAATGCTCATTTAACATTC AGAGTTTTCATTAAAATAAAAAATTTGGCATTGATACTCTGGTATTTTAAATGATGTTTA AAGACATATGGATATGTTTGTTTGTTTGTTTGTTTTTGTAATCATACTTGCTGTCCCAAA ACAAGTATATTGTAATATGCCTGTTAAAATTCAGCAAAGACAGTAAAAAAATAAGTGCTA TGTGGGAAATTAAAGAAAAATTGAGCCAGAGTCTTTATATTCCTGACTTTAATTTGATTA AAGCGAAATTTA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCTCCCGTCGGTCTCCGGCGAGACTGGCTGCAGGGAGGCCTGAAAGCGGGCGGAGAGGAG AGCGGGAGGCCGGAGCTTATTTAATGAAAAGTCCCGTAGATTGAAAAACCAAACATGAGG GTAGCAGGTGCTGCAAAGTTGGTGGTAGCTGTGGCAGTATTTTTACTGACATTCTATGTT ATATCTCAAGTATTTGAAATAAAAATGGATGCAAGTTTAGGAAATCTATTTGCAAGGTCA GCCTTGGACACAGCTGCACGTCCTACAAAACCTCCCAGATATAAATGTGGGATCTCAAAA GCTTGCCCTGAGAAGCATTTTGCTTTTAAAATGGCAAGTGGAGCAGCCAATGTGGTGGGA CCCAAAATCTGCCTGGAAGACAATGTTTTAATGAGTGGTGTTAAGAATAATGTTGGAAGA GGGATCAATGTTGCCTTGGTAAATGGGAAAACAGGAGAACTATTAGACACCAGATATTTC GACATGTGGGGAGGAAATGTGGCTCCGTTTATTGAGTTTCTTAAGTCCATACAAGATGGA ACAATAGTCTTAATGGGAACATACGATGATGGAGCAACCAAACTCAATGATGAAGCAAGG CGGCTCATTGCTGAATTGGGGAGTACATCCATTATTAATCTTGGTTTCAGAGACAACTGG GTCTTCTGTGGTGGGAAAGGCATTAAGACAAAAAGCCCTTTTGAACAGCACATAAAGAAC AATAAGGACACAAACAAATATGAAGGATGGCCTGAAGTTGTGGAAATGGAAGGATGCATC CCCCAGAAGCAAGACTGACATGGAGCAAACTGAAGGGCACCCACTGTCACTATTAATGGG GAAGCTGTAACAGAACAAGTACATGTAAATATTTTAAGAGCATGCAGTCATCTCGGTGTA TGCATGAACATTCTCTCTTTTGATATCAGGATTATTTATTGCTAACGTAAATAGGTATCT TTGTAAATAGTCATCATGAGAAGCAAATCACTGAAGTGTTTCTTAGCACATCTCCGTAAT GATACAATGTTTAGACTGCTATGATAATGCCATCTTTTAATTCTAAAAGCATACCCAGTG GATAACTGAACAGATTGGAAAAATAGAGGGATATATATACAAGTTGCGATGAAAATCTAT CATGGAATAATATGGATTTTAGGGAAGAGACTTTGTTTCTTTTATATATATATTGCCTTT GATGATAGTATCTTTTAAATTAAAAAGATATTTGGCAAGTTGTATGTGTAATATGTACAG TCTGACTCTTCTGTGGTACTTCTTTTCGTAGTCTTTCTCTTCCCATCCCAAGAAACCTAG AAATAAAATATGAAGACTTCTATCAAATATGTGAAAAGCACAACAGAATTCTTTTTTTAA GTGTACACAGGAGAAAGTAAATATATCAAGGCAGATGGCGTTCAAGACTGTAGCTTGCTG GATTTGGTGTTAGCAGTGGGAATCACTTGATTTCGTATGAGCCGTTTAGAGTACGGCTGC TCAGAGTAAGAGCTGAGGGGCCGCCAAGTCCCTTCCCAGCCTCTGTAGGTCCTTCAGGAA AGCATGTCAGTATAGTTAGAGCAACACTGGCCTAAGTTGTCCTCATTTAATTGTTATCAC AATGGACCAAGTGGCTTAGAAAGAGGCATGCTTTAACATCAACAATAATTTTGATTTGTA AACCAAGAAATTCTGTTACTTACGTTCATCTAACTTCCTCACAGCAGTTTCGGCCTGAAA AGATAACGATGTATTTAGAAAAGTCCTAATGACTGATTGGAACTAATAATGTCTAAAAAA TACTTTATTTGATACACAATGACTTTGTAATCAATTCTACATAAAAATATAAGAGATCTA ACTTTTTTGTTAACCTCAGATATTTGCAGAATGACTCAAGTTTTTAAAATATTTTTAGGG CATTAAATATCTACCGTGTATGAAGGATCTTAAACTGGAGCATTGAAAATGTAATGACCA AGCAGCCATTCACAATAAAAGGCAGTCCTTAAATTCTAGATCTAAGTTTTAGGTGATTTA TATATAAAAAAACTAAAAGCAGTATTTTTTATTTTGCTGTAACCAAGTTGGAAGTTATTC AGCTACTTCTTAAATATCAGTGAGTTTGGGGGTACTCTTTCCTCCCCCAGACCGAATGTA ATTCATGGTTAAGTGCACCTTATACATTCACAATTTTTGTAAACTTTTCAGACTTTTGGT GCTGTTATGCTACACCACAGTCAGCATGTGTATTTTGACGTTTAAAATACTTTCCTCGCT TCTGTAAATTAAAAGAATAGCTATTTTAGATTTCCAGAGATTGTGAAATAAATGTTGCTT TTTTTCAAAAAAAAAAAAAAAAAAAAGAGAGAGAGAGAGAGAATAAATACTCTTGATTTG GCATTGTGAGTTTTTTTGTATTACCTGACCAGTGATATGACCACAGAACTTCACACTGAG GTCTGTCGAGCGTTTATTGTTCTGCTTAACATGCAAAATTTAAGTCATTCCTATGGTTAA ACATACCCATTTCCTCAGGCTGTATCTTAACATGGATAGAATTTAAGTATTGAAATGGCA GGACACCCTTTCATGTTACAAGGACTGTAACATGATAGTTTTGTAGAGGTGTATAAAATG CCAGAAGAAGGGATAAAGATTGATTATGTAACTGCTTTCATGCAGTGTGCTTTTGTTTCA ATTCTGTCTTGCATAGATTATGCCAGCTTAACTTTGGAAGCAATAATTTTACTGTATTTT GTTTTCAGATAGCTTTCAAAAATCAGCATTGCAAAATGTAGCAATGCTCATTTAACATTC AGAGTTTTCATTAAAATAAAAAATTTGGCATTGATACTCTGGTATTTTAAATGATGTTTA AAGACATATGGATATGTTTGTTTGTTTGTTTGTTTTTGTAATCATACTTGCTGTCCCAAA ACAAGTATATTGTAATATGCCTGTTAAAATTCAGCAAAGACAGTAAAAAAATAAGTGCTA TGTGGGAAATTAAAGAAAAATTGAGCCAGAGTCTTTATATTCCTGACTTTAATTTGATTA AAGCGAAATTTA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 263-382, - strand, RNAz p=0.930248 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 263-382, - strand, RNAz p=0.930248 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 126-232, gnl|bosTau2|chr29 (35990503-35990397) | |
| 126-232, gnl|Hg17|chr7 (120613020-120612915) | |
| 126-232, gnl|Mm7|chr6 (22275489-22275383) | |
| 263-393, gnl|bosTau2|chr29 (35978467-35978337) | |
| 263-393, gnl|canFam2|chr14 (62401336-62401457) | |
| 263-393, gnl|danRer3|chr4 (21297035-21297146) | |
| 263-393, gnl|dasNov1|scaffold_47560 (6589-6470) | |
| 263-393, gnl|echTel1|scaffold_317402 (2769-2649) | |
| 263-393, gnl|fr1|chrUn (8611261-8611151) | |
| 263-393, gnl|galGal2|chr1 (20198598-20198478) | |
| 263-393, gnl|hg17|chr7 (120605289-120605409) | |
| 263-393, gnl|Hg17|chr7 (120605428-120605298) | |
| 263-393, gnl|loxAfr1|scaffold_37334 (34626-34746) | |
| 263-393, gnl|mm7|chr6 (22264649-22264769) | |
| 263-393, gnl|Mm7|chr6 (22264788-22264658) | |
| 263-393, gnl|monDom2|scaffold_22 (25689105-25688983) | |
| 263-393, gnl|oryCun1|scaffold_189784 (5495-5375) | |
| 263-393, gnl|panTro1|chr6 (122947792-122947912) | |
| 263-393, gnl|rheMac2|chr3 (158892390-158892510) | |
| 263-393, gnl|rn3|chr4 (48880161-48880281) | |
| 263-393, gnl|tetNig1|chr19 (1938611-1938719) | |
| 263-393, gnl|xenTro1|scaffold_17 (3407118-3407235) | |
| 704-3054, gnl|bosTau2|chr29 (35959536-35957229) | |
| 704-3054, gnl|Hg17|chr7 (120584560-120582226) | |
| 704-3054, gnl|Mm7|chr6 (22244653-22242492) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 126-232, gnl|bosTau2|chr29 (35990503-35990397) | |
| 126-232, gnl|Hg17|chr7 (120613020-120612915) | |
| 126-232, gnl|Mm7|chr6 (22275489-22275383) | |
| 263-393, gnl|bosTau2|chr29 (35978467-35978337) | |
| 263-393, gnl|canFam2|chr14 (62401336-62401457) | |
| 263-393, gnl|danRer3|chr4 (21297035-21297146) | |
| 263-393, gnl|dasNov1|scaffold_47560 (6589-6470) | |
| 263-393, gnl|echTel1|scaffold_317402 (2769-2649) | |
| 263-393, gnl|fr1|chrUn (8611261-8611151) | |
| 263-393, gnl|galGal2|chr1 (20198598-20198478) | |
| 263-393, gnl|hg17|chr7 (120605289-120605409) | |
| 263-393, gnl|Hg17|chr7 (120605428-120605298) | |
| 263-393, gnl|loxAfr1|scaffold_37334 (34626-34746) | |
| 263-393, gnl|mm7|chr6 (22264649-22264769) | |
| 263-393, gnl|Mm7|chr6 (22264788-22264658) | |
| 263-393, gnl|monDom2|scaffold_22 (25689105-25688983) | |
| 263-393, gnl|oryCun1|scaffold_189784 (5495-5375) | |
| 263-393, gnl|panTro1|chr6 (122947792-122947912) | |
| 263-393, gnl|rheMac2|chr3 (158892390-158892510) | |
| 263-393, gnl|rn3|chr4 (48880161-48880281) | |
| 263-393, gnl|tetNig1|chr19 (1938611-1938719) | |
| 263-393, gnl|xenTro1|scaffold_17 (3407118-3407235) | |
| 704-3054, gnl|bosTau2|chr29 (35959536-35957229) | |
| 704-3054, gnl|Hg17|chr7 (120584560-120582226) | |
| 704-3054, gnl|Mm7|chr6 (22244653-22242492) |
| Expressed library(ies): 52 entry(ies) | More info |
| Expressed library(ies): 52 entry(ies) | Help | Less info |
| sag (1.64444) | |
| lin (1.16482) | |
| tra (1.10783) | |
| cty (0.832639) | |
| fco (0.78604) | |
| sug (0.763747) | |
| liv (0.731422) | |
| cbe (0.717703) | |
| mgp (0.692042) | |
| kid (0.648677) | |
| sin (0.524843) | |
| jej (0.395687) | |
| ova (0.387397) | |
| ret (0.3862) | |
| nlu (0.383362) | |
| eru (0.360144) | |
| rec (0.346141) | |
| duo (0.345602) | |
| fhi (0.339155) | |
| mga (0.32041) | |
| sme (0.305437) | |
| isp (0.300752) | |
| bfe (0.299715) | |
| pty (0.285429) | |
| fce (0.271592) | |
| pla (0.267344) | |
| ebs (0.236602) | |
| spc (0.226732) | |
| tes (0.207814) | |
| eje (0.197668) | |
| aor (0.195274) | |
| mgm (0.180343) | |
| gul (0.177588) | |
| nje (0.16592) | |
| cje (0.165235) | |
| nco (0.161734) | |
| fat (0.147427) | |
| ski (0.146735) | |
| spl (0.143184) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| cst (0.140036) | |
| hlv (0.139256) | |
| nca (0.136874) | |
| ste (0.135208) | |
| lyg (0.133103) | |
| ese (0.126502) | |
| bla (0.124347) | |
| med (0.116252) | |
| ecc (0.115035) | |
| cbl (0.114797) | |
| ldo (0.0970026) |
| Expressed library(ies): 52 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sag (1.64444) | |
| lin (1.16482) | |
| tra (1.10783) | |
| cty (0.832639) | |
| fco (0.78604) | |
| sug (0.763747) | |
| liv (0.731422) | |
| cbe (0.717703) | |
| mgp (0.692042) | |
| kid (0.648677) | |
| sin (0.524843) | |
| jej (0.395687) | |
| ova (0.387397) | |
| ret (0.3862) | |
| nlu (0.383362) | |
| eru (0.360144) | |
| rec (0.346141) | |
| duo (0.345602) | |
| fhi (0.339155) | |
| mga (0.32041) | |
| sme (0.305437) | |
| isp (0.300752) | |
| bfe (0.299715) | |
| pty (0.285429) | |
| fce (0.271592) | |
| pla (0.267344) | |
| ebs (0.236602) | |
| spc (0.226732) | |
| tes (0.207814) | |
| eje (0.197668) | |
| aor (0.195274) | |
| mgm (0.180343) | |
| gul (0.177588) | |
| nje (0.16592) | |
| cje (0.165235) | |
| nco (0.161734) | |
| fat (0.147427) | |
| ski (0.146735) | |
| spl (0.143184) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| cst (0.140036) | |
| hlv (0.139256) | |
| nca (0.136874) | |
| ste (0.135208) | |
| lyg (0.133103) | |
| ese (0.126502) | |
| bla (0.124347) | |
| med (0.116252) | |
| ecc (0.115035) | |
| cbl (0.114797) | |
| ldo (0.0970026) |