Ss1.1-rsug09_f1.5
|
TGTTATTGGTCAGACTATAACTATCAGCCGAGTAGAAGGAAGGCGACGGGCAAATGAAAA
CAGCAACATACAGGTCCTTTCTGAAAGATCTGCTACTGAAGTAGACAACAATTTTAGCAA
ACCACCTCCATTTTTCCCTCCAGGAGCTCCTCCCACCCACCTTCCACCTCCTCCATTTCT
TCCACCTCCTCCCACTGTCAGCACTGCTCCACCTCTGATTCCACCTCCAGGTTTTCCTCC
TCCACCAGGTGCTCCACCTCCATCTCTTATACCAACAATAGAAAGTGGACATTCCTCTGG
TTATGATAGTCGTTCTGCACGTGCTTTTCCATATGGCAATGTTGCCTTTCCCCATCTTCC
TGGATCTGCTCCTTCATGGCCAAGTCTTGTGGACACCAGCAAGCAGTGGGACTATTATGC
AAGAAGAGAGAAAGACCGAGATAGAGACAGAGACCGAGACCGAGAACGAGATCGTGATCG
GGACAGAGAGAGAGAACGCACTAGAGAGAGAGAGAGGGAGCGTGATCACAGTCCCACGCC
GAGTGTTTTCAACAGTGATGAAGAACGATACAGATACAGGGAGTATGCAGAAAGAGGCTA
TGAGCGCCACAGAGCAAGCCGGGAGAAAGAAGAACGACACAGAGAAAGACGACACAGAGA
GAAAGAGGAGACCAGACACAAGTCCTCTCGAAGTAATAGTAGACGTCGCCATGAAAGTGA
AGAAGGAGACAGTCATAGAAGACACAAGCACAAAAAATCTAAAAGAAGCAAAGAAGGAAA
AGAAGCTGGTAGTGAGCCTGCCCCTGAACAGGAAAGCACCGAAGCTACACCTGCAGAGTA
AGGCAGGTCATGGCCTCTTGTGTATAGTAGTGCCAGAAATAGATACTCTAAATCTTGTTA
TTTTTCTGGATAATGTTTAAGAAATTTGCCTTTACTCTTGTTCTGTTAGTATGAAAAGTT
AACTTTTTTCTTCCAAAATAAAAGAGTGAATTTTTCATGTTAAGTTAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TGTTATTGGTCAGACTATAACTATCAGCCGAGTAGAAGGAAGGCGACGGGCAAATGAAAA
CAGCAACATACAGGTCCTTTCTGAAAGATCTGCTACTGAAGTAGACAACAATTTTAGCAA
ACCACCTCCATTTTTCCCTCCAGGAGCTCCTCCCACCCACCTTCCACCTCCTCCATTTCT
TCCACCTCCTCCCACTGTCAGCACTGCTCCACCTCTGATTCCACCTCCAGGTTTTCCTCC
TCCACCAGGTGCTCCACCTCCATCTCTTATACCAACAATAGAAAGTGGACATTCCTCTGG
TTATGATAGTCGTTCTGCACGTGCTTTTCCATATGGCAATGTTGCCTTTCCCCATCTTCC
TGGATCTGCTCCTTCATGGCCAAGTCTTGTGGACACCAGCAAGCAGTGGGACTATTATGC
AAGAAGAGAGAAAGACCGAGATAGAGACAGAGACCGAGACCGAGAACGAGATCGTGATCG
GGACAGAGAGAGAGAACGCACTAGAGAGAGAGAGAGGGAGCGTGATCACAGTCCCACGCC
GAGTGTTTTCAACAGTGATGAAGAACGATACAGATACAGGGAGTATGCAGAAAGAGGCTA
TGAGCGCCACAGAGCAAGCCGGGAGAAAGAAGAACGACACAGAGAAAGACGACACAGAGA
GAAAGAGGAGACCAGACACAAGTCCTCTCGAAGTAATAGTAGACGTCGCCATGAAAGTGA
AGAAGGAGACAGTCATAGAAGACACAAGCACAAAAAATCTAAAAGAAGCAAAGAAGGAAA
AGAAGCTGGTAGTGAGCCTGCCCCTGAACAGGAAAGCACCGAAGCTACACCTGCAGAGTA
AGGCAGGTCATGGCCTCTTGTGTATAGTAGTGCCAGAAATAGATACTCTAAATCTTGTTA
TTTTTCTGGATAATGTTTAAGAAATTTGCCTTTACTCTTGTTCTGTTAGTATGAAAAGTT
AACTTTTTTCTTCCAAAATAAAAGAGTGAATTTTTCATGTTAAGTTAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
Human gene identifier and UTR site,
human gene reading direction
|
72-232, gnl|bosTau2|chr6 (37549590-37549750) |
|
72-232, gnl|canFam2|chr13 (48986166-48986429) |
|
72-232, gnl|echTel1|scaffold_310476 (49526-49252) |
|
72-232, gnl|hg17|chr4 (54135016-54135286) |
|
72-232, gnl|Hg17|chr4 (54135120-54135280) |
|
72-232, gnl|loxAfr1|scaffold_4253 (29294-28995) |
|
72-232, gnl|mm7|chr5 (73991031-73991297) |
|
72-232, gnl|Mm7|chr5 (73991131-73991291) |
|
72-232, gnl|monDom2|scaffold_26 (17027460-17027726) |
|
72-232, gnl|oryCun1|scaffold_141334 (6535-6250) |
|
72-232, gnl|panTro1|chr3 (92532472-92532202) |
|
72-232, gnl|rheMac2|chr5 (75963038-75962768) |
|
72-232, gnl|rn3|chr14 (36016818-36016548) |
|
72-232, gnl|xenTro1|scaffold_248 (519594-519870) |
| |
|
341-560, gnl|bosTau2|chr6 (37568887-37569106) |
|
341-560, gnl|Hg17|chr4 (54160014-54160233) |
|
341-560, gnl|Mm7|chr5 (74010545-74010770) |
| |
|
692-1008, gnl|bosTau2|chr6 (37577206-37577518) |
|
692-1008, gnl|Hg17|chr4 (54166395-54166714) |
|
692-1008, gnl|Mm7|chr5 (74014609-74014922) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
72-232, gnl|bosTau2|chr6 (37549590-37549750) |
|
72-232, gnl|canFam2|chr13 (48986166-48986429) |
|
72-232, gnl|echTel1|scaffold_310476 (49526-49252) |
|
72-232, gnl|hg17|chr4 (54135016-54135286) |
|
72-232, gnl|Hg17|chr4 (54135120-54135280) |
|
72-232, gnl|loxAfr1|scaffold_4253 (29294-28995) |
|
72-232, gnl|mm7|chr5 (73991031-73991297) |
|
72-232, gnl|Mm7|chr5 (73991131-73991291) |
|
72-232, gnl|monDom2|scaffold_26 (17027460-17027726) |
|
72-232, gnl|oryCun1|scaffold_141334 (6535-6250) |
|
72-232, gnl|panTro1|chr3 (92532472-92532202) |
|
72-232, gnl|rheMac2|chr5 (75963038-75962768) |
|
72-232, gnl|rn3|chr14 (36016818-36016548) |
|
72-232, gnl|xenTro1|scaffold_248 (519594-519870) |
| |
|
341-560, gnl|bosTau2|chr6 (37568887-37569106) |
|
341-560, gnl|Hg17|chr4 (54160014-54160233) |
|
341-560, gnl|Mm7|chr5 (74010545-74010770) |
| |
|
692-1008, gnl|bosTau2|chr6 (37577206-37577518) |
|
692-1008, gnl|Hg17|chr4 (54166395-54166714) |
|
692-1008, gnl|Mm7|chr5 (74014609-74014922) |
|
ova (0.387397) |
|
sug (0.381874) |
|
sin (0.349895) |
|
isp (0.300752) |
|
ski (0.29347) |
|
cst (0.280073) |
|
fcc (0.197785) |
|
aor (0.195274) |
|
sto (0.179824) |
|
fty (0.17584) |
|
lin (0.145603) |
|
kid (0.129735) |
|
thg (0.126791) |
|
tra (0.123092) |
|
pgl (0.118483) |
|
jej (0.0989218) |
|
ova (0.387397) |
|
sug (0.381874) |
|
sin (0.349895) |
|
isp (0.300752) |
|
ski (0.29347) |
|
cst (0.280073) |
|
fcc (0.197785) |
|
aor (0.195274) |
|
sto (0.179824) |
|
fty (0.17584) |
|
lin (0.145603) |
|
kid (0.129735) |
|
thg (0.126791) |
|
tra (0.123092) |
|
pgl (0.118483) |
|
jej (0.0989218) |
