Non-Coding RNA Search

Ss1.1-rsug09_h11.5

Sequence:


               
               GAGATCTGGACTTCAAATACAGCTGTGTGCTGAGCAAACTTGACTGCTCTAAACACTGAA
ATTCAGTTCCTTTGCCAATTCCATGGGCAAGCATTCCGGAGGCCTGAGTTGAAATGTGCA
GATAAATACTCTGTGCTAGAGTTCTTGGTGCCAAAGCATACAGAATACTTGTGTTCTGCT
GTGGAAATCTTGGAAGAACAGAACTTCTGTTTTTAATATCTCTGAGGATTTAAAACAGTT
TTTAGACTACTTATTACCTTTCATAAAACTCACTCCTACTTTAAAAGTCTCTTCTTGGCT
TACCTATATTAAAAAGAGGAAAAGAATACTTTTTGATTCCACTGAGTTTTGTCTTCTTTA
TTGAAGTTAACCAAGCTAATAAGAGAAAGGACAGCAGTGGAAAAAGTATAGAAATGGGAC
TCAGAATGGGTATTTTAAAAAAAAAATGTGATCTTGAGCTTTCTCATTTGTAAAATGAGA
AGGGTGATGATCTCTAAGATTCCTTTTGGAAAAGCGGGGAAACTCACAACTTTTAAGCAC
ATACTGAGTGCCATGCATGTGAAATACAATTATTTAGTCCTCATAACAACCCTGAGATGA
GGACATTATAATATTTTCATTGAACAGACAAAGAATCCAAAGAACAAAGGCATTGTATAA
TATGCCCAAGGTCACAAAGTGAATTAAAAATGGATACATCTGGCTCCAAATGTATGCATC
TTTTTATTTCCATTTGTATGGCATGAGCTCTCGTGCTTTTTAGTGAATTTGCAGAATAGA
ATAAATGAGTAAATTGATAAAGTGAGGAAAAGTTAAAACATTCAAAGCTTGGCCTGGACA
TTTATCGACAAATTATCTTTGACATGGGTAAATATGAAGAGCTAGAGACAAAAGAGAAGT
ACTTCACGAAGTATCACTAAGTTCCTTACTATGTAGAATTTCTCCATTTCATGATGTCTT
ACATCGCAACAACATTTTTTGGTATTTGCTTATATATCTTATTATACAGAATTTGCTGTA
ATGCTTACACATGATGAAACATGTCTGTAATATGATGGCAATAAACCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGATCTGGACTTCAAATACAGCTGTGTGCTGAGCAAACTTGACTGCTCTAAACACTGAA
ATTCAGTTCCTTTGCCAATTCCATGGGCAAGCATTCCGGAGGCCTGAGTTGAAATGTGCA
GATAAATACTCTGTGCTAGAGTTCTTGGTGCCAAAGCATACAGAATACTTGTGTTCTGCT
GTGGAAATCTTGGAAGAACAGAACTTCTGTTTTTAATATCTCTGAGGATTTAAAACAGTT
TTTAGACTACTTATTACCTTTCATAAAACTCACTCCTACTTTAAAAGTCTCTTCTTGGCT
TACCTATATTAAAAAGAGGAAAAGAATACTTTTTGATTCCACTGAGTTTTGTCTTCTTTA
TTGAAGTTAACCAAGCTAATAAGAGAAAGGACAGCAGTGGAAAAAGTATAGAAATGGGAC
TCAGAATGGGTATTTTAAAAAAAAAATGTGATCTTGAGCTTTCTCATTTGTAAAATGAGA
AGGGTGATGATCTCTAAGATTCCTTTTGGAAAAGCGGGGAAACTCACAACTTTTAAGCAC
ATACTGAGTGCCATGCATGTGAAATACAATTATTTAGTCCTCATAACAACCCTGAGATGA
GGACATTATAATATTTTCATTGAACAGACAAAGAATCCAAAGAACAAAGGCATTGTATAA
TATGCCCAAGGTCACAAAGTGAATTAAAAATGGATACATCTGGCTCCAAATGTATGCATC
TTTTTATTTCCATTTGTATGGCATGAGCTCTCGTGCTTTTTAGTGAATTTGCAGAATAGA
ATAAATGAGTAAATTGATAAAGTGAGGAAAAGTTAAAACATTCAAAGCTTGGCCTGGACA
TTTATCGACAAATTATCTTTGACATGGGTAAATATGAAGAGCTAGAGACAAAAGAGAAGT
ACTTCACGAAGTATCACTAAGTTCCTTACTATGTAGAATTTCTCCATTTCATGATGTCTT
ACATCGCAACAACATTTTTTGGTATTTGCTTATATATCTTATTATACAGAATTTGCTGTA
ATGCTTACACATGATGAAACATGTCTGTAATATGATGGCAATAAACCT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               158-277, - strand, RNAz p=0.784417

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               158-277, - strand, RNAz p=0.784417

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1067, gnl|bosTau2|chr6 (1148571-1149639)
               

               
               1-1067, gnl|Hg17|chr4 (122309177-122308086)
               

               
               1-1067, gnl|Mm7|chr6 (65699022-65700052)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1067, gnl|bosTau2|chr6 (1148571-1149639)
               

               
               1-1067, gnl|Hg17|chr4 (122309177-122308086)
               

               
               1-1067, gnl|Mm7|chr6 (65699022-65700052)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               sug (0.127291)
               

               
               bla (0.124347)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sug (0.127291)
               

               
               bla (0.124347)

	1-1067, gnl\|bosTau2\|chr6 (1148571-1149639)
	1-1067, gnl\|Hg17\|chr4 (122309177-122308086)
	1-1067, gnl\|Mm7\|chr6 (65699022-65700052)